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Protein

Cell division control protein 48 homolog B

Gene

CDC48B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi63 – 70ATPSequence analysis8
Nucleotide bindingi327 – 334ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processCell cycle, Cell division, Protein transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Cell division control protein 48 homolog B
Short name:
AtCDC48b
Gene namesi
Name:CDC48B
Ordered Locus Names:At2g03670
ORF Names:F19B11.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G03670.
TAIRilocus:2044209. AT2G03670.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000845801 – 603Cell division control protein 48 homolog BAdd BLAST603

Proteomic databases

PaxDbiQ9ZPR1.
PRIDEiQ9ZPR1.

Expressioni

Gene expression databases

ExpressionAtlasiQ9ZPR1. baseline and differential.
GenevisibleiQ9ZPR1. AT.

Interactioni

Protein-protein interaction databases

BioGridi296. 7 interactors.
STRINGi3702.AT2G03670.1.

Structurei

3D structure databases

ProteinModelPortaliQ9ZPR1.
SMRiQ9ZPR1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the AAA ATPase family.Curated

Phylogenomic databases

eggNOGiKOG0730. Eukaryota.
COG0464. LUCA.
HOGENOMiHOG000223225.
InParanoidiQ9ZPR1.
OMAiQSIEWPM.
OrthoDBiEOG093606GD.
PhylomeDBiQ9ZPR1.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR003960. ATPase_AAA_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00004. AAA. 2 hits.
SMARTiView protein in SMART
SM00382. AAA. 2 hits.
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiView protein in PROSITE
PS00674. AAA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9ZPR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART
60 70 80 90 100
LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
110 120 130 140 150
EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF
160 170 180 190 200
TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
210 220 230 240 250
RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS
260 270 280 290 300
SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
310 320 330 340 350
AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS
360 370 380 390 400
LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
410 420 430 440 450
SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD
460 470 480 490 500
LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
510 520 530 540 550
CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK
560 570 580 590 600
RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA

SAT
Length:603
Mass (Da):65,909
Last modified:May 1, 1999 - v1
Checksum:iA3035450B30DB39D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006836 Genomic DNA. Translation: AAD20084.1.
CP002685 Genomic DNA. Translation: AEC05734.1.
AY062443 mRNA. Translation: AAL32521.1.
BT008371 mRNA. Translation: AAP37730.1.
PIRiA84451.
RefSeqiNP_178463.1. NM_126415.6.
UniGeneiAt.27340.

Genome annotation databases

EnsemblPlantsiAT2G03670.1; AT2G03670.1; AT2G03670.
GeneIDi814895.
GrameneiAT2G03670.1; AT2G03670.1; AT2G03670.
KEGGiath:AT2G03670.

Similar proteinsi

Entry informationi

Entry nameiCD48B_ARATH
AccessioniPrimary (citable) accession number: Q9ZPR1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 2003
Last sequence update: May 1, 1999
Last modified: June 7, 2017
This is version 124 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families