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Reviewed, UniProtKB/Swiss-Prot Q9ZNB7 (ALGL_HALMR)

Last modified June 16, 2009. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Alginate lyase
    EC=4.2.2.3
Alternative name(s):
    Poly(beta-D-mannuronate) lyase
    Poly(mana) alginate lyase
Gene names
Name: algL
Synonyms: alg
OrganismHalomonas marina (Deleya marina)
Taxonomic identifier28258 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaOceanospirillalesHalomonadaceaeCobetia

Protein attributes

Sequence length374 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity.

Catalytic activity

Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557

Subcellular location

Periplasm By similarity.

Sequence similarities

Belongs to the polysaccharide lyase 5 family.

Ontologies

Keywords
   Cellular componentPeriplasm
   DomainSignal
   Molecular functionLyase
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential
Chain27 – 374348Alginate lyase HAMAP MF_00557
PRO_0000024917

Sequences

Sequence LengthMass (Da)Tools
Q9ZNB7-1 [UniParc].

Last modified May 1, 1999. Version 1.
Checksum: 416616B1D8A2E0FA

FASTA37442,219
        10         20         30         40         50         60 
MRNPKLKNLL APTLLSLAMF AGATQAAAPL RPPQGYFAPV DKFKTGDKSD GCDAMPAPYT 

        70         80         90        100        110        120 
GPLQFRSKYE GSDKARATLN VQSEKAFRDT TKDITTLERG TAKRVMQFMR DGRPEQLECT 

       130        140        150        160        170        180 
LNWLTAWAKA DALMSKDFNH TGKSMRKWAL GSMASSYIRL KFSDSHPLAQ HQQEAQLIEA 

       190        200        210        220        230        240 
WFSKMADQVV SDWDNLPLEK TNNHSYWAAW SVMATAVATN RRDLFDWAVK EYKVGVNQVD 

       250        260        270        280        290        300 
ADGFLPNELK RQQRALAYHN YALPPLAMIA SFAQINGVDL RQENNGALKR LGDRVLAGVK 

       310        320        330        340        350        360 
DPDEFEEKNG KKQDMTDLKE DMKFAWLEPF CTLYTCAPDV IEKKRDMQPF KTFRLGGDLT 

       370 
KVYDPSHEKG NKGS 

« Hide

References

[1]"Alginate lyase gene from Deleya marina."
Kraiwattanapong J., Ooi T., Kinoshita S.
Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: N-1.

Cross-references

Sequence databases

AB018795 Genomic DNA. Translation: BAA33966.1.

3D structure databases

ModBaseSearch...

Protein family/group databases

CAZyPL5. Polysaccharide Lyase Family 5.

Enzyme and pathway databases

BRENDA4.2.2.3. 275445.

Family and domain databases

HAMAPMF_00557.
[Tree]
InterProIPR008397. Alginate_lyase.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameALGL_HALMR
AccessionPrimary (citable) accession number: Q9ZNB7
Entry history
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: May 1, 1999
Last modified: June 16, 2009
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents