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Protein

Recombination protein RecR

Gene

recR

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri57 – 72C4-typeUniRule annotationAdd BLAST16

GO - Molecular functioni

GO - Biological processi

  • DNA recombination Source: UniProtKB-HAMAP
  • double-strand break repair Source: CACAO
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA recombination, DNA repair

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Recombination protein RecRUniRule annotation
Gene namesi
Name:recRUniRule annotation
Ordered Locus Names:DR_0198
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001903151 – 220Recombination protein RecRAdd BLAST220

Interactioni

Protein-protein interaction databases

IntActiQ9ZNA2. 1 interactor.
MINTiMINT-4981183.
STRINGi243230.DR_0198.

Structurei

Secondary structure

1220
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 15Combined sources11
Helixi22 – 32Combined sources11
Beta strandi33 – 35Combined sources3
Helixi37 – 53Combined sources17
Beta strandi58 – 60Combined sources3
Beta strandi63 – 68Combined sources6
Helixi70 – 73Combined sources4
Beta strandi75 – 77Combined sources3
Beta strandi81 – 87Combined sources7
Helixi88 – 93Combined sources6
Turni94 – 97Combined sources4
Beta strandi102 – 106Combined sources5
Helixi113 – 115Combined sources3
Beta strandi121 – 123Combined sources3
Helixi125 – 130Combined sources6
Beta strandi136 – 139Combined sources4
Helixi145 – 158Combined sources14
Beta strandi164 – 167Combined sources4
Beta strandi170 – 172Combined sources3
Helixi178 – 180Combined sources3
Helixi183 – 191Combined sources9
Beta strandi194 – 197Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VDDX-ray2.50A/B/C/D1-220[»]
2V1CX-ray3.80A/B1-220[»]
4JCVX-ray3.34A/B/C/D2-220[»]
ProteinModelPortaliQ9ZNA2.
SMRiQ9ZNA2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9ZNA2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini80 – 173ToprimUniRule annotationAdd BLAST94

Sequence similaritiesi

Belongs to the RecR family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri57 – 72C4-typeUniRule annotationAdd BLAST16

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG4105F3K. Bacteria.
COG0353. LUCA.
HOGENOMiHOG000103272.
InParanoidiQ9ZNA2.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiPOG091H01SF.

Family and domain databases

HAMAPiMF_00017. RecR. 1 hit.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZNA2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYPPSLVSL IRELSRLPGI GPKSAQRLAF HLFEQPREDI ERLASALLEA
60 70 80 90 100
KRDLHVCPIC FNITDAEKCD VCADPSRDQR TICVVEEPGD VIALERSGEY
110 120 130 140 150
RGLYHVLHGV LSPMNGVGPD KLHIKPLLPR VGQGMEVILA TGTTVEGDAT
160 170 180 190 200
ALYLQRLLEP LGAAISRIAY GVPVGGSLEY TDEVTLGRAL TGRQTVSKPQ
210 220
PPQRPGDEDG ADGAAVPASR
Length:220
Mass (Da):23,723
Last modified:May 30, 2000 - v2
Checksum:iCAF60A203044EA0C
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti88P → H in BAA34648 (PubMed:11056289).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020240 Genomic DNA. Translation: BAA34648.1.
AE000513 Genomic DNA. Translation: AAF09785.1.
PIRiH75547.
RefSeqiNP_293922.1. NC_001263.1.
WP_010886844.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF09785; AAF09785; DR_0198.
GeneIDi1799164.
KEGGidra:DR_0198.
PATRICi21627879. VBIDeiRad64572_0362.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020240 Genomic DNA. Translation: BAA34648.1.
AE000513 Genomic DNA. Translation: AAF09785.1.
PIRiH75547.
RefSeqiNP_293922.1. NC_001263.1.
WP_010886844.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VDDX-ray2.50A/B/C/D1-220[»]
2V1CX-ray3.80A/B1-220[»]
4JCVX-ray3.34A/B/C/D2-220[»]
ProteinModelPortaliQ9ZNA2.
SMRiQ9ZNA2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9ZNA2. 1 interactor.
MINTiMINT-4981183.
STRINGi243230.DR_0198.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09785; AAF09785; DR_0198.
GeneIDi1799164.
KEGGidra:DR_0198.
PATRICi21627879. VBIDeiRad64572_0362.

Phylogenomic databases

eggNOGiENOG4105F3K. Bacteria.
COG0353. LUCA.
HOGENOMiHOG000103272.
InParanoidiQ9ZNA2.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiPOG091H01SF.

Miscellaneous databases

EvolutionaryTraceiQ9ZNA2.

Family and domain databases

HAMAPiMF_00017. RecR. 1 hit.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRECR_DEIRA
AccessioniPrimary (citable) accession number: Q9ZNA2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: November 2, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.