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Protein

Recombination protein RecR

Gene

recR

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri57 – 7216C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • DNA recombination Source: UniProtKB-HAMAP
  • double-strand break repair Source: CACAO
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA recombination, DNA repair

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciDRAD243230:GH46-204-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Recombination protein RecRUniRule annotation
Gene namesi
Name:recRUniRule annotation
Ordered Locus Names:DR_0198
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 220220Recombination protein RecRPRO_0000190315Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiQ9ZNA2. 1 interaction.
MINTiMINT-4981183.
STRINGi243230.DR_0198.

Structurei

Secondary structure

1
220
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 1511Combined sources
Helixi22 – 3211Combined sources
Beta strandi33 – 353Combined sources
Helixi37 – 5317Combined sources
Beta strandi58 – 603Combined sources
Beta strandi63 – 686Combined sources
Helixi70 – 734Combined sources
Beta strandi75 – 773Combined sources
Beta strandi81 – 877Combined sources
Helixi88 – 936Combined sources
Turni94 – 974Combined sources
Beta strandi102 – 1065Combined sources
Helixi113 – 1153Combined sources
Beta strandi121 – 1233Combined sources
Helixi125 – 1306Combined sources
Beta strandi136 – 1394Combined sources
Helixi145 – 15814Combined sources
Beta strandi164 – 1674Combined sources
Beta strandi170 – 1723Combined sources
Helixi178 – 1803Combined sources
Helixi183 – 1919Combined sources
Beta strandi194 – 1974Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VDDX-ray2.50A/B/C/D1-220[»]
2V1CX-ray3.80A/B1-220[»]
4JCVX-ray3.34A/B/C/D2-220[»]
ProteinModelPortaliQ9ZNA2.
SMRiQ9ZNA2. Positions 1-199.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9ZNA2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini80 – 17394ToprimUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RecR family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri57 – 7216C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG4105F3K. Bacteria.
COG0353. LUCA.
HOGENOMiHOG000103272.
InParanoidiQ9ZNA2.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiPOG091H01SF.

Family and domain databases

HAMAPiMF_00017. RecR. 1 hit.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZNA2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYPPSLVSL IRELSRLPGI GPKSAQRLAF HLFEQPREDI ERLASALLEA
60 70 80 90 100
KRDLHVCPIC FNITDAEKCD VCADPSRDQR TICVVEEPGD VIALERSGEY
110 120 130 140 150
RGLYHVLHGV LSPMNGVGPD KLHIKPLLPR VGQGMEVILA TGTTVEGDAT
160 170 180 190 200
ALYLQRLLEP LGAAISRIAY GVPVGGSLEY TDEVTLGRAL TGRQTVSKPQ
210 220
PPQRPGDEDG ADGAAVPASR
Length:220
Mass (Da):23,723
Last modified:May 30, 2000 - v2
Checksum:iCAF60A203044EA0C
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti88 – 881P → H in BAA34648 (PubMed:11056289).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020240 Genomic DNA. Translation: BAA34648.1.
AE000513 Genomic DNA. Translation: AAF09785.1.
PIRiH75547.
RefSeqiNP_293922.1. NC_001263.1.
WP_010886844.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF09785; AAF09785; DR_0198.
GeneIDi1799164.
KEGGidra:DR_0198.
PATRICi21627879. VBIDeiRad64572_0362.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020240 Genomic DNA. Translation: BAA34648.1.
AE000513 Genomic DNA. Translation: AAF09785.1.
PIRiH75547.
RefSeqiNP_293922.1. NC_001263.1.
WP_010886844.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VDDX-ray2.50A/B/C/D1-220[»]
2V1CX-ray3.80A/B1-220[»]
4JCVX-ray3.34A/B/C/D2-220[»]
ProteinModelPortaliQ9ZNA2.
SMRiQ9ZNA2. Positions 1-199.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9ZNA2. 1 interaction.
MINTiMINT-4981183.
STRINGi243230.DR_0198.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09785; AAF09785; DR_0198.
GeneIDi1799164.
KEGGidra:DR_0198.
PATRICi21627879. VBIDeiRad64572_0362.

Phylogenomic databases

eggNOGiENOG4105F3K. Bacteria.
COG0353. LUCA.
HOGENOMiHOG000103272.
InParanoidiQ9ZNA2.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiPOG091H01SF.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-204-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9ZNA2.

Family and domain databases

HAMAPiMF_00017. RecR. 1 hit.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRECR_DEIRA
AccessioniPrimary (citable) accession number: Q9ZNA2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: September 7, 2016
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.