Catalase - Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)

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Reviewed, UniProtKB/Swiss-Prot Q9ZN99 (CATA_DESVM)

Last modified June 16, 2009. Version 43. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
Catalase
EC=1.11.1.6

Gene names

Name:	katA
Synonyms:	kat
Ordered Locus Names:	DvMF_1242

Organism

Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio

Protein attributes

Sequence length	480 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
Catalytic activity	2 H₂O₂ = O₂ + 2 H₂O.
Cofactor	Heme group.
Sequence similarities	Belongs to the catalase family.

Ontologies

Keywords
Biological process	Hydrogen peroxide
Ligand	Heme Iron Metal-binding
Molecular function	Oxidoreductase Peroxidase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	hydrogen peroxide catabolic process Inferred from electronic annotation. Source: UniProtKB-KW oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	catalase activity Inferred from electronic annotation. Source: EC iron ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

480

Catalase

PRO_0000084985

Sites

Active site

1

By similarity

Active site

1

By similarity

Metal binding

1

Iron (heme axial ligand) By similarity

Experimental info

Sequence conflict

1

D → T in BAA34670. Ref.1

Sequence conflict

1

Missing in BAA34670. Ref.1

Sequences

Sequence

Length

Mass (Da)

Tools

Q9ZN99-1 [UniParc].

Last modified April 14, 2009. Version 2.
Checksum: EAE7540616B77AE4
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480

54,678

        10         20         30         40         50         60 
MTKHKLTTNA GAPVPDNQNA MTAGPRGPML LQDVWFLEKL AHFDREVIPE RRMHAKGSGA 

        70         80         90        100        110        120 
YGTFTVTHDI TSYTKAALFS KIGKKTDLFV RFSTVAGERG AADAERDIRG FAIKFYTEQG 

       130        140        150        160        170        180 
NWDLVGNNTP VFFLRDPLKF PDLNHAVKRD PRTNMRSAKN NWDFWTSLPE ALHQVTVVMS 

       190        200        210        220        230        240 
DRGIPASYRH MHGFGSHTFS FISPDNQRYW VKFHLRTQQG IKNLTDAEAE AIVARDRESH 

       250        260        270        280        290        300 
QRDLYDSIER GDFPRWTMYV QVMPEKDAEK LPYHPFDLTK VWFHKDCPLI EVGVLELNRN 

       310        320        330        340        350        360 
PENYFAEVEQ AAFNPANVVP GISFSPDKML QGRLFSYGDA HRYRLGVNHH LIPVNAARCP 

       370        380        390        400        410        420 
VHSYHRDGAM RVDGNHGSTL AYEPNSYGEW QEQPDFAEPP LAIRGDAAHW NFREDDADYY 

       430        440        450        460        470        480 
DQPGRLFRLM TPQQQDELFQ NTARAMGDAP EEIKRRHVGN CAKADPAYGA GVARALGLKM

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Catalase from strictly anaerobic bacteria, Desulfovibrio vulgaris (Miyazaki F)." Kitamura M., Kojima S., Akutsu H., Kumagai I., Nakaya T. Submitted (NOV-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P. Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
	AB020341 Genomic DNA. Translation: BAA34670.1. CP001197 Genomic DNA. Translation: ACL08192.1.
RefSeq	YP_002435660.1.
3D structure databases
HSSP	HSSP built from PDB template 1M85 based on UniProtKB P42321.
SMR	Q9ZN99. Positions 5-479.
ModBase	Search...
Genome annotation databases
GeneID	7173145.
GenomeReviews	Gene locus DvMF_1242 in contig CP001197_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR002226. Catalase. IPR018028. Catalase_rel_subgroup. [Graphical view]
Pfam	PF00199. Catalase. 1 hit. [Graphical view]
PRINTS	PR00067. CATALASE.
ProDom	PD000510. Catalase. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00437. CATALASE_1. 1 hit. PS00438. CATALASE_2. 1 hit. PS51402. CATALASE_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

CATA_DESVM

Accession

Primary (citable) accession number: Q9ZN99
Secondary accession number(s): B8DLD0

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	April 14, 2009
Last modified:	June 16, 2009
This is version 43 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents