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Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi33 – 40ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processDNA damage, DNA repair, DNA replication, SOS response
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRPRO272947:G1GT0-29-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecF
Gene namesi
Name:recF
Ordered Locus Names:RP029
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
Proteomesi
  • UP000002480 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001964501 – 360DNA replication and repair protein RecFAdd BLAST360

Proteomic databases

PRIDEiQ9ZEB6

Interactioni

Protein-protein interaction databases

STRINGi272947.RP029

Structurei

3D structure databases

ProteinModelPortaliQ9ZEB6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RecF family.Curated

Phylogenomic databases

eggNOGiENOG4105C3X Bacteria
COG1195 LUCA
HOGENOMiHOG000269558
KOiK03629
OMAiGQQKSFL

Family and domain databases

HAMAPiMF_00365 RecF, 1 hit
InterProiView protein in InterPro
IPR001238 DNA-binding_RecF
IPR018078 DNA-binding_RecF_CS
IPR027417 P-loop_NTPase
IPR003395 RecF/RecN/SMC_N
PANTHERiPTHR32182:SF0 PTHR32182:SF0, 1 hit
PfamiView protein in Pfam
PF02463 SMC_N, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00611 recf, 1 hit
PROSITEiView protein in PROSITE
PS00617 RECF_1, 1 hit
PS00618 RECF_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9ZEB6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNIFLHSLT LENYRNFKNL ELKTDNTPII LTGENGSGKT NILEAISLFY
60 70 80 90 100
PGRGLRSSKL TDICKTSEDY CKVKTLLQSK LGLAELSTHI KRSSNRRITE
110 120 130 140 150
YNASKIANNE LSKFTNMVWL TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH
160 170 180 190 200
AALLNKYEYY MHERNKILAE DIRDNNWLKI IEEKMADISN NIANNRLKTI
210 220 230 240 250
RFIQQAIDDI ENEFPKADLS IDGIIEQKIL NVEGDIVNFI ITELYKTRSK
260 270 280 290 300
DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEINST
310 320 330 340 350
IKLTKITPIL LLDEIFVHLD DKRRQYLMGF FNALNIQLWV TATDLDGIEN
360
FANKAQLIKL
Length:360
Mass (Da):41,489
Last modified:May 1, 1999 - v1
Checksum:i500B37B88D77A16D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ235270 Genomic DNA Translation: CAA14500.1
PIRiE71710
RefSeqiNP_220423.1, NC_000963.1
WP_004596661.1, NC_000963.1

Genome annotation databases

EnsemblBacteriaiCAA14500; CAA14500; CAA14500
GeneIDi883560
KEGGirpr:RP029
PATRICifig|272947.5.peg.29

Similar proteinsi

Entry informationi

Entry nameiRECF_RICPR
AccessioniPrimary (citable) accession number: Q9ZEB6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: May 23, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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