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Q9ZEB6 (RECF_RICPR) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF
Gene names
Name:recF
Ordered Locus Names:RP029
OrganismRickettsia prowazekii (strain Madrid E) [Reference proteome] [HAMAP]
Taxonomic identifier272947 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. HAMAP-Rule MF_00365

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00365.

Sequence similarities

Belongs to the RecF family.

Ontologies

Keywords
   Biological processDNA damage
DNA repair
DNA replication
SOS response
   Cellular componentCytoplasm
   LigandATP-binding
DNA-binding
Nucleotide-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: UniProtKB-HAMAP

DNA replication

Inferred from electronic annotation. Source: UniProtKB-HAMAP

SOS response

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

single-stranded DNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 360360DNA replication and repair protein RecF HAMAP-Rule MF_00365
PRO_0000196450

Regions

Nucleotide binding33 – 408ATP Potential

Sequences

Sequence LengthMass (Da)Tools
Q9ZEB6 [UniParc].

Last modified May 1, 1999. Version 1.
Checksum: 500B37B88D77A16D

FASTA36041,489
        10         20         30         40         50         60 
MKNIFLHSLT LENYRNFKNL ELKTDNTPII LTGENGSGKT NILEAISLFY PGRGLRSSKL 

        70         80         90        100        110        120 
TDICKTSEDY CKVKTLLQSK LGLAELSTHI KRSSNRRITE YNASKIANNE LSKFTNMVWL 

       130        140        150        160        170        180 
TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH AALLNKYEYY MHERNKILAE DIRDNNWLKI 

       190        200        210        220        230        240 
IEEKMADISN NIANNRLKTI RFIQQAIDDI ENEFPKADLS IDGIIEQKIL NVEGDIVNFI 

       250        260        270        280        290        300 
ITELYKTRSK DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEINST 

       310        320        330        340        350        360 
IKLTKITPIL LLDEIFVHLD DKRRQYLMGF FNALNIQLWV TATDLDGIEN FANKAQLIKL 

« Hide

References

[1]"The genome sequence of Rickettsia prowazekii and the origin of mitochondria."
Andersson S.G.E., Zomorodipour A., Andersson J.O., Sicheritz-Ponten T., Alsmark U.C.M., Podowski R.M., Naeslund A.K., Eriksson A.-S., Winkler H.H., Kurland C.G.
Nature 396:133-140(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Madrid E.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ235270 Genomic DNA. Translation: CAA14500.1.
PIRE71710.
RefSeqNP_220423.1. NC_000963.1.

3D structure databases

ProteinModelPortalQ9ZEB6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272947.RP029.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAA14500; CAA14500; CAA14500.
GeneID883560.
KEGGrpr:RP029.
PATRIC17900790. VBIRicPro72556_0029.

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269558.
KOK03629.
OMALDDIMSH.
OrthoDBEOG6HTP3X.
ProtClustDBPRK00064.

Family and domain databases

Gene3D3.40.50.300. 3 hits.
HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECF_RICPR
AccessionPrimary (citable) accession number: Q9ZEB6
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: April 16, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia prowazekii

Rickettsia prowazekii (strain Madrid E): entries and gene names