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Q9ZEB6

- RECF_RICPR

UniProt

Q9ZEB6 - RECF_RICPR

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Protein

DNA replication and repair protein RecF

Gene
recF, RP029
Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi33 – 408ATP Reviewed prediction

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. single-stranded DNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. DNA repair Source: UniProtKB-HAMAP
  2. DNA replication Source: UniProtKB-HAMAP
  3. SOS response Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair, DNA replication, SOS response

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecF
Gene namesi
Name:recF
Ordered Locus Names:RP029
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360DNA replication and repair protein RecFUniRule annotationPRO_0000196450Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272947.RP029.

Structurei

3D structure databases

ProteinModelPortaliQ9ZEB6.

Family & Domainsi

Sequence similaritiesi

Belongs to the RecF family.

Phylogenomic databases

eggNOGiCOG1195.
HOGENOMiHOG000269558.
KOiK03629.
OMAiHVVFTGH.
OrthoDBiEOG6HTP3X.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
HAMAPiMF_00365. RecF.
InterProiIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00611. recf. 1 hit.
PROSITEiPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ZEB6-1 [UniParc]FASTAAdd to Basket

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MKNIFLHSLT LENYRNFKNL ELKTDNTPII LTGENGSGKT NILEAISLFY    50
PGRGLRSSKL TDICKTSEDY CKVKTLLQSK LGLAELSTHI KRSSNRRITE 100
YNASKIANNE LSKFTNMVWL TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH 150
AALLNKYEYY MHERNKILAE DIRDNNWLKI IEEKMADISN NIANNRLKTI 200
RFIQQAIDDI ENEFPKADLS IDGIIEQKIL NVEGDIVNFI ITELYKTRSK 250
DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEINST 300
IKLTKITPIL LLDEIFVHLD DKRRQYLMGF FNALNIQLWV TATDLDGIEN 350
FANKAQLIKL 360
Length:360
Mass (Da):41,489
Last modified:May 1, 1999 - v1
Checksum:i500B37B88D77A16D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235270 Genomic DNA. Translation: CAA14500.1.
PIRiE71710.
RefSeqiNP_220423.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA14500; CAA14500; CAA14500.
GeneIDi883560.
KEGGirpr:RP029.
PATRICi17900790. VBIRicPro72556_0029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235270 Genomic DNA. Translation: CAA14500.1 .
PIRi E71710.
RefSeqi NP_220423.1. NC_000963.1.

3D structure databases

ProteinModelPortali Q9ZEB6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272947.RP029.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAA14500 ; CAA14500 ; CAA14500 .
GeneIDi 883560.
KEGGi rpr:RP029.
PATRICi 17900790. VBIRicPro72556_0029.

Phylogenomic databases

eggNOGi COG1195.
HOGENOMi HOG000269558.
KOi K03629.
OMAi HVVFTGH.
OrthoDBi EOG6HTP3X.

Family and domain databases

Gene3Di 3.40.50.300. 3 hits.
HAMAPi MF_00365. RecF.
InterProi IPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view ]
Pfami PF02463. SMC_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00611. recf. 1 hit.
PROSITEi PS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiRECF_RICPR
AccessioniPrimary (citable) accession number: Q9ZEB6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: May 14, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi