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Q9ZEB6

- RECF_RICPR

UniProt

Q9ZEB6 - RECF_RICPR

Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 84 (01 Oct 2014)
      Sequence version 1 (01 May 1999)
      Previous versions | rss
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    Functioni

    The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi33 – 408ATPSequence Analysis

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA repair Source: UniProtKB-HAMAP
    2. DNA replication Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA repair, DNA replication, SOS response

    Keywords - Ligandi

    ATP-binding, DNA-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA replication and repair protein RecF
    Gene namesi
    Name:recF
    Ordered Locus Names:RP029
    OrganismiRickettsia prowazekii (strain Madrid E)
    Taxonomic identifieri272947 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000002480: Chromosome

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 360360DNA replication and repair protein RecFPRO_0000196450Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi272947.RP029.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9ZEB6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecF family.Curated

    Phylogenomic databases

    eggNOGiCOG1195.
    HOGENOMiHOG000269558.
    KOiK03629.
    OMAiHVVFTGH.
    OrthoDBiEOG6HTP3X.

    Family and domain databases

    Gene3Di3.40.50.300. 3 hits.
    HAMAPiMF_00365. RecF.
    InterProiIPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view]
    PfamiPF02463. SMC_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00611. recf. 1 hit.
    PROSITEiPS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9ZEB6-1 [UniParc]FASTAAdd to Basket

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    MKNIFLHSLT LENYRNFKNL ELKTDNTPII LTGENGSGKT NILEAISLFY    50
    PGRGLRSSKL TDICKTSEDY CKVKTLLQSK LGLAELSTHI KRSSNRRITE 100
    YNASKIANNE LSKFTNMVWL TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH 150
    AALLNKYEYY MHERNKILAE DIRDNNWLKI IEEKMADISN NIANNRLKTI 200
    RFIQQAIDDI ENEFPKADLS IDGIIEQKIL NVEGDIVNFI ITELYKTRSK 250
    DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEINST 300
    IKLTKITPIL LLDEIFVHLD DKRRQYLMGF FNALNIQLWV TATDLDGIEN 350
    FANKAQLIKL 360
    Length:360
    Mass (Da):41,489
    Last modified:May 1, 1999 - v1
    Checksum:i500B37B88D77A16D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235270 Genomic DNA. Translation: CAA14500.1.
    PIRiE71710.
    RefSeqiNP_220423.1. NC_000963.1.

    Genome annotation databases

    EnsemblBacteriaiCAA14500; CAA14500; CAA14500.
    GeneIDi883560.
    KEGGirpr:RP029.
    PATRICi17900790. VBIRicPro72556_0029.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235270 Genomic DNA. Translation: CAA14500.1 .
    PIRi E71710.
    RefSeqi NP_220423.1. NC_000963.1.

    3D structure databases

    ProteinModelPortali Q9ZEB6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272947.RP029.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAA14500 ; CAA14500 ; CAA14500 .
    GeneIDi 883560.
    KEGGi rpr:RP029.
    PATRICi 17900790. VBIRicPro72556_0029.

    Phylogenomic databases

    eggNOGi COG1195.
    HOGENOMi HOG000269558.
    KOi K03629.
    OMAi HVVFTGH.
    OrthoDBi EOG6HTP3X.

    Family and domain databases

    Gene3Di 3.40.50.300. 3 hits.
    HAMAPi MF_00365. RecF.
    InterProi IPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view ]
    Pfami PF02463. SMC_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00611. recf. 1 hit.
    PROSITEi PS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Madrid E.

    Entry informationi

    Entry nameiRECF_RICPR
    AccessioniPrimary (citable) accession number: Q9ZEB6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 84 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Rickettsia prowazekii
      Rickettsia prowazekii (strain Madrid E): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3