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Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
With S5 and S12 plays an important role in translational accuracy.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRPRO272947:G1GT0-347-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4UniRule annotation
Gene namesi
Name:rpsDUniRule annotation
Ordered Locus Names:RP345
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
Proteomesi
  • UP000002480 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001324471 – 20530S ribosomal protein S4Add BLAST205

Proteomic databases

PRIDEiQ9ZDI3

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Protein-protein interaction databases

STRINGi272947.RP345

Structurei

3D structure databases

ProteinModelPortaliQ9ZDI3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini94 – 157S4 RNA-bindingUniRule annotationAdd BLAST64

Sequence similaritiesi

Belongs to the universal ribosomal protein uS4 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105G6W Bacteria
COG0522 LUCA
HOGENOMiHOG000221004
KOiK02986
OMAiDNVVFRM

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
HAMAPiMF_01306_B Ribosomal_S4_B, 1 hit
InterProiView protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR001912 Ribosomal_S4/S9_N
IPR005709 Ribosomal_S4_bac-type
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PANTHERiPTHR11831 PTHR11831, 1 hit
PTHR11831:SF4 PTHR11831:SF4, 1 hit
PfamiView protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM01390 Ribosomal_S4, 1 hit
SM00363 S4, 1 hit
TIGRFAMsiTIGR01017 rpsD_bact, 1 hit
PROSITEiView protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

Q9ZDI3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKIVRSKYK ASRRLGVSLW GDSKDAFNTR NYRPGQHGQN TMIKTSDYGL
60 70 80 90 100
HLKAKQRLKC YYGRVTEKQF RNIFALAQRM KGNTGENFIG LLESRLDTVV
110 120 130 140 150
YRMNIAPTIF AARQLVSHGH IKLNGKKADI ASIRLKEGDI IEIKESIQQI
160 170 180 190 200
PLIQESISKQ GQTTPGYLSF DIPSLTGKYL RVPALSDVPY PFEAEVHLVI

ELYSR
Length:205
Mass (Da):23,318
Last modified:May 1, 1999 - v1
Checksum:i3750C8D28A9FAF49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ235271 Genomic DNA Translation: CAA14805.1
PIRiC71691
RefSeqiNP_220728.1, NC_000963.1
WP_004597472.1, NC_000963.1

Genome annotation databases

EnsemblBacteriaiCAA14805; CAA14805; CAA14805
GeneIDi883363
KEGGirpr:RP345
PATRICifig|272947.5.peg.355

Similar proteinsi

Entry informationi

Entry nameiRS4_RICPR
AccessioniPrimary (citable) accession number: Q9ZDI3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: May 23, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

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