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Q9ZCW8

- SECD_RICPR

UniProt

Q9ZCW8 - SECD_RICPR

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Protein

Protein translocase subunit SecD

Gene

secD

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.UniRule annotation

GO - Molecular functioni

  1. P-P-bond-hydrolysis-driven protein transmembrane transporter activity Source: InterPro

GO - Biological processi

  1. intracellular protein transmembrane transport Source: UniProtKB-HAMAP
  2. protein targeting Source: UniProtKB-HAMAP
  3. protein transport by the Sec complex Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Protein transport, Translocation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Protein translocase subunit SecDUniRule annotation
Gene namesi
Name:secDUniRule annotation
Ordered Locus Names:RP586
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei9 – 2921HelicalUniRule annotationAdd
BLAST
Transmembranei356 – 37621HelicalUniRule annotationAdd
BLAST
Transmembranei377 – 39721HelicalUniRule annotationAdd
BLAST
Transmembranei406 – 42621HelicalUniRule annotationAdd
BLAST
Transmembranei463 – 48321HelicalUniRule annotationAdd
BLAST
Transmembranei486 – 50621HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. intracellular Source: GOC
  3. plasma membrane Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 518518Protein translocase subunit SecDPRO_0000095968Add
BLAST

Interactioni

Subunit structurei

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.UniRule annotation

Protein-protein interaction databases

STRINGi272947.RP586.

Structurei

3D structure databases

ProteinModelPortaliQ9ZCW8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SecD/SecF family. SecD subfamily.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0342.
HOGENOMiHOG000018636.
KOiK03072.
OMAiMATVFIE.
OrthoDBiEOG6N0HJT.

Family and domain databases

HAMAPiMF_01463_B. SecD_B.
InterProiIPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view]
PfamiPF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9ZCW8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQNLPKWKIV LSIICTVFAI ICALPNFIQI NSKFLPHDSI NLGLDLRGGA
60 70 80 90 100
NLLLDVDFDT YLNDSMENLA DTLRKNLRKH KIGYKNLLVR HNNIQLEVRS
110 120 130 140 150
PEVLKSLKKI INKIDPEIII GVNKNKIKLR YSESRFNDLL NKVVEQSIEI
160 170 180 190 200
VRMRVDSTGT KEPTLQRQGN KHILLQVPGS ENPSYLKNIL GKTAKLTFHL
210 220 230 240 250
VDENANIEDA IKGHVPLGSM LIKGDSKHHG EYYIVIKKKV LLSGAHLTKA
260 270 280 290 300
SASFDQNSQP IVAFSFNNLG SKIFGEITKN NTGKRLAIVL DNKLLSAPII
310 320 330 340 350
NGAIIGGNGI ITGNFTIESA NELALLLRVG SLPTPLKIIE ERSIGPNLGA
360 370 380 390 400
DSIESGKKAG LIGFVAVCIF MILSYGVIGL FANIALILAL LYILALLSLF
410 420 430 440 450
QATLTLPGIA GIILTIGMAV DANVLIYERI KEELHKGVSN LYAIRTGFES
460 470 480 490 500
AFATIIDSNI TTLIVAFALY IFGVGAIKGF AVALTIGIIS SMFSAIIITK
510
LLIDVWVKYF KPKKLGLL
Length:518
Mass (Da):56,712
Last modified:May 1, 1999 - v1
Checksum:i86D6FC2A5B5DE2AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ235272 Genomic DNA. Translation: CAA15031.1.
PIRiE71663.
RefSeqiNP_220955.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA15031; CAA15031; CAA15031.
GeneIDi883986.
KEGGirpr:RP586.
PATRICi17901983. VBIRicPro72556_0602.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ235272 Genomic DNA. Translation: CAA15031.1 .
PIRi E71663.
RefSeqi NP_220955.1. NC_000963.1.

3D structure databases

ProteinModelPortali Q9ZCW8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272947.RP586.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAA15031 ; CAA15031 ; CAA15031 .
GeneIDi 883986.
KEGGi rpr:RP586.
PATRICi 17901983. VBIRicPro72556_0602.

Phylogenomic databases

eggNOGi COG0342.
HOGENOMi HOG000018636.
KOi K03072.
OMAi MATVFIE.
OrthoDBi EOG6N0HJT.

Family and domain databases

HAMAPi MF_01463_B. SecD_B.
InterProi IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
[Graphical view ]
Pfami PF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiSECD_RICPR
AccessioniPrimary (citable) accession number: Q9ZCW8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: October 29, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3