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Q9ZCV3

- RL25_RICPR

UniProt

Q9ZCV3 - RL25_RICPR

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Protein
50S ribosomal protein L25
Gene
rplY, ctc, RP606
Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25
Alternative name(s):
General stress protein CTC
Gene namesi
Name:rplY
Synonyms:ctc
Ordered Locus Names:RP606
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20320350S ribosomal protein L25UniRule annotation
PRO_0000181588Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Protein-protein interaction databases

STRINGi272947.RP606.

Structurei

3D structure databases

ProteinModelPortaliQ9ZCV3.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1825.
HOGENOMiHOG000214907.
KOiK02897.
OMAiIPVHFIN.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamiPF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9ZCV3-1 [UniParc]FASTAAdd to Basket

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MSGILELEAK SRTEFGTGAA RALRREGRVP AIIYGAGKTP ISISLKEKEI    50
TKYYRKPAFI SQLINLTIDK KQYKVLPKAV ELHPVTDIVR HVDFVFLEAK 100
TQKMEVPIVY EGKERALGVK RGGYFNIIKR RVILLCDVNN IPRNVTIDVT 150
NMPIGTSLKS SQVELPKGCS FITKKEFVLA TIIGRRGVKT EIEGEQEVAE 200
AIQ 203
Length:203
Mass (Da):22,728
Last modified:May 1, 1999 - v1
Checksum:iD01871AD009EDA03
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235272 Genomic DNA. Translation: CAA15050.1.
PIRiH71665.
RefSeqiNP_220974.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA15050; CAA15050; CAA15050.
GeneIDi883776.
KEGGirpr:RP606.
PATRICi17902029. VBIRicPro72556_0625.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235272 Genomic DNA. Translation: CAA15050.1 .
PIRi H71665.
RefSeqi NP_220974.1. NC_000963.1.

3D structure databases

ProteinModelPortali Q9ZCV3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272947.RP606.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAA15050 ; CAA15050 ; CAA15050 .
GeneIDi 883776.
KEGGi rpr:RP606.
PATRICi 17902029. VBIRicPro72556_0625.

Phylogenomic databases

eggNOGi COG1825.
HOGENOMi HOG000214907.
KOi K02897.
OMAi IPVHFIN.
OrthoDBi EOG6SZ1PC.

Family and domain databases

Gene3Di 2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPi MF_01334. Ribosomal_L25_CTC.
MF_01336. Ribosomal_L25.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view ]
Pfami PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50715. SSF50715. 1 hit.
TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiRL25_RICPR
AccessioniPrimary (citable) accession number: Q9ZCV3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: September 3, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi