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Q9ZCV3

- RL25_RICPR

UniProt

Q9ZCV3 - RL25_RICPR

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (01 May 1999)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:RP606
    OrganismiRickettsia prowazekii (strain Madrid E)
    Taxonomic identifieri272947 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000002480: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20320350S ribosomal protein L25PRO_0000181588Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Protein-protein interaction databases

    STRINGi272947.RP606.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9ZCV3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    HOGENOMiHOG000214907.
    KOiK02897.
    OMAiIPVHFIN.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9ZCV3-1 [UniParc]FASTAAdd to Basket

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    MSGILELEAK SRTEFGTGAA RALRREGRVP AIIYGAGKTP ISISLKEKEI    50
    TKYYRKPAFI SQLINLTIDK KQYKVLPKAV ELHPVTDIVR HVDFVFLEAK 100
    TQKMEVPIVY EGKERALGVK RGGYFNIIKR RVILLCDVNN IPRNVTIDVT 150
    NMPIGTSLKS SQVELPKGCS FITKKEFVLA TIIGRRGVKT EIEGEQEVAE 200
    AIQ 203
    Length:203
    Mass (Da):22,728
    Last modified:May 1, 1999 - v1
    Checksum:iD01871AD009EDA03
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235272 Genomic DNA. Translation: CAA15050.1.
    PIRiH71665.
    RefSeqiNP_220974.1. NC_000963.1.

    Genome annotation databases

    EnsemblBacteriaiCAA15050; CAA15050; CAA15050.
    GeneIDi883776.
    KEGGirpr:RP606.
    PATRICi17902029. VBIRicPro72556_0625.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235272 Genomic DNA. Translation: CAA15050.1 .
    PIRi H71665.
    RefSeqi NP_220974.1. NC_000963.1.

    3D structure databases

    ProteinModelPortali Q9ZCV3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272947.RP606.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAA15050 ; CAA15050 ; CAA15050 .
    GeneIDi 883776.
    KEGGi rpr:RP606.
    PATRICi 17902029. VBIRicPro72556_0625.

    Phylogenomic databases

    eggNOGi COG1825.
    HOGENOMi HOG000214907.
    KOi K02897.
    OMAi IPVHFIN.
    OrthoDBi EOG6SZ1PC.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    MF_01336. Ribosomal_L25.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    IPR020055. Ribosomal_L25_short.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Madrid E.

    Entry informationi

    Entry nameiRL25_RICPR
    AccessioniPrimary (citable) accession number: Q9ZCV3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia prowazekii
      Rickettsia prowazekii (strain Madrid E): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3