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Q9ZCQ6

- RL4_RICPR

UniProt

Q9ZCQ6 - RL4_RICPR

Protein

50S ribosomal protein L4

Gene

rplD

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (01 May 1999)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
    Forms part of the polypeptide exit tunnel.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L4UniRule annotation
    Gene namesi
    Name:rplDUniRule annotation
    Ordered Locus Names:RP658
    OrganismiRickettsia prowazekii (strain Madrid E)
    Taxonomic identifieri272947 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000002480: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20720750S ribosomal protein L4PRO_0000129268Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi272947.RP658.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9ZCQ6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L4P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0088.
    HOGENOMiHOG000248767.
    KOiK02926.
    OMAiILNHECV.
    OrthoDBiEOG6M0T9G.

    Family and domain databases

    Gene3Di3.40.1370.10. 1 hit.
    HAMAPiMF_01328_B. Ribosomal_L4_B.
    InterProiIPR002136. Ribosomal_L4/L1e.
    IPR013005. Ribosomal_L4/L1e_bac-type.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view]
    PANTHERiPTHR10746. PTHR10746. 1 hit.
    PfamiPF00573. Ribosomal_L4. 1 hit.
    [Graphical view]
    SUPFAMiSSF52166. SSF52166. 1 hit.
    TIGRFAMsiTIGR03953. rplD_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9ZCQ6-1 [UniParc]FASTAAdd to Basket

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    MKTKILSLAN EEVGEITLNK DIFAVEFIRD DIIKQVIDWQ RAKAMFGNHK    50
    TKTVSEVSGT TKKPFKQKGT GNARQGSLRS VQMRGGGISH GPKVRSHAIK 100
    LPKKVRKLGL IHALSEKYAE EKLLIIDSLK LDKPKTSILV NLLSKFQGQS 150
    FFVIDGNKVD INFSLATKNI YNTLIVPQIG ANVYDIIRHE YVLLSQEAVS 200
    FLEERLR 207
    Length:207
    Mass (Da):23,288
    Last modified:May 1, 1999 - v1
    Checksum:iAA652123EB22797E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235272 Genomic DNA. Translation: CAA15098.1.
    PIRiH71671.
    RefSeqiNP_221022.1. NC_000963.1.

    Genome annotation databases

    EnsemblBacteriaiCAA15098; CAA15098; CAA15098.
    GeneIDi883872.
    KEGGirpr:RP658.
    PATRICi17902143. VBIRicPro72556_0680.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ235272 Genomic DNA. Translation: CAA15098.1 .
    PIRi H71671.
    RefSeqi NP_221022.1. NC_000963.1.

    3D structure databases

    ProteinModelPortali Q9ZCQ6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272947.RP658.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAA15098 ; CAA15098 ; CAA15098 .
    GeneIDi 883872.
    KEGGi rpr:RP658.
    PATRICi 17902143. VBIRicPro72556_0680.

    Phylogenomic databases

    eggNOGi COG0088.
    HOGENOMi HOG000248767.
    KOi K02926.
    OMAi ILNHECV.
    OrthoDBi EOG6M0T9G.

    Family and domain databases

    Gene3Di 3.40.1370.10. 1 hit.
    HAMAPi MF_01328_B. Ribosomal_L4_B.
    InterProi IPR002136. Ribosomal_L4/L1e.
    IPR013005. Ribosomal_L4/L1e_bac-type.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view ]
    PANTHERi PTHR10746. PTHR10746. 1 hit.
    Pfami PF00573. Ribosomal_L4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52166. SSF52166. 1 hit.
    TIGRFAMsi TIGR03953. rplD_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Madrid E.

    Entry informationi

    Entry nameiRL4_RICPR
    AccessioniPrimary (citable) accession number: Q9ZCQ6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia prowazekii
      Rickettsia prowazekii (strain Madrid E): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3