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Q9ZCQ6

- RL4_RICPR

UniProt

Q9ZCQ6 - RL4_RICPR

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Protein

50S ribosomal protein L4

Gene
rplD, RP658
Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome By similarity.UniRule annotation
Forms part of the polypeptide exit tunnel By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L4
Gene namesi
Name:rplD
Ordered Locus Names:RP658
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20720750S ribosomal protein L4UniRule annotationPRO_0000129268Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi272947.RP658.

Structurei

3D structure databases

ProteinModelPortaliQ9ZCQ6.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0088.
HOGENOMiHOG000248767.
KOiK02926.
OMAiILNHECV.
OrthoDBiEOG6M0T9G.

Family and domain databases

Gene3Di3.40.1370.10. 1 hit.
HAMAPiMF_01328_B. Ribosomal_L4_B.
InterProiIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERiPTHR10746. PTHR10746. 1 hit.
PfamiPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMiSSF52166. SSF52166. 1 hit.
TIGRFAMsiTIGR03953. rplD_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9ZCQ6-1 [UniParc]FASTAAdd to Basket

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MKTKILSLAN EEVGEITLNK DIFAVEFIRD DIIKQVIDWQ RAKAMFGNHK    50
TKTVSEVSGT TKKPFKQKGT GNARQGSLRS VQMRGGGISH GPKVRSHAIK 100
LPKKVRKLGL IHALSEKYAE EKLLIIDSLK LDKPKTSILV NLLSKFQGQS 150
FFVIDGNKVD INFSLATKNI YNTLIVPQIG ANVYDIIRHE YVLLSQEAVS 200
FLEERLR 207
Length:207
Mass (Da):23,288
Last modified:May 1, 1999 - v1
Checksum:iAA652123EB22797E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235272 Genomic DNA. Translation: CAA15098.1.
PIRiH71671.
RefSeqiNP_221022.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA15098; CAA15098; CAA15098.
GeneIDi883872.
KEGGirpr:RP658.
PATRICi17902143. VBIRicPro72556_0680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ235272 Genomic DNA. Translation: CAA15098.1 .
PIRi H71671.
RefSeqi NP_221022.1. NC_000963.1.

3D structure databases

ProteinModelPortali Q9ZCQ6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272947.RP658.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAA15098 ; CAA15098 ; CAA15098 .
GeneIDi 883872.
KEGGi rpr:RP658.
PATRICi 17902143. VBIRicPro72556_0680.

Phylogenomic databases

eggNOGi COG0088.
HOGENOMi HOG000248767.
KOi K02926.
OMAi ILNHECV.
OrthoDBi EOG6M0T9G.

Family and domain databases

Gene3Di 3.40.1370.10. 1 hit.
HAMAPi MF_01328_B. Ribosomal_L4_B.
InterProi IPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view ]
PANTHERi PTHR10746. PTHR10746. 1 hit.
Pfami PF00573. Ribosomal_L4. 1 hit.
[Graphical view ]
SUPFAMi SSF52166. SSF52166. 1 hit.
TIGRFAMsi TIGR03953. rplD_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiRL4_RICPR
AccessioniPrimary (citable) accession number: Q9ZCQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: May 14, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi