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Protein

50S ribosomal protein L4

Gene

rplD

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
Forms part of the polypeptide exit tunnel.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRPRO272947:G1GT0-658-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L4UniRule annotation
Gene namesi
Name:rplDUniRule annotation
Ordered Locus Names:RP658
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
Proteomesi
  • UP000002480 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001292681 – 20750S ribosomal protein L4Add BLAST207

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi272947.RP658

Structurei

3D structure databases

ProteinModelPortaliQ9ZCQ6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL4 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106U5A Bacteria
COG0088 LUCA
HOGENOMiHOG000248767
KOiK02926
OMAiDYSFKLN

Family and domain databases

Gene3Di3.40.1370.101 hit
HAMAPiMF_01328_B Ribosomal_L4_B, 1 hit
InterProiView protein in InterPro
IPR002136 Ribosomal_L4/L1e
IPR023574 Ribosomal_L4_dom_sf
IPR013005 Ribosomal_uL4/L1e
PANTHERiPTHR10746 PTHR10746, 1 hit
PfamiView protein in Pfam
PF00573 Ribosomal_L4, 1 hit
SUPFAMiSSF52166 SSF52166, 1 hit
TIGRFAMsiTIGR03953 rplD_bact, 1 hit

Sequencei

Sequence statusi: Complete.

Q9ZCQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTKILSLAN EEVGEITLNK DIFAVEFIRD DIIKQVIDWQ RAKAMFGNHK
60 70 80 90 100
TKTVSEVSGT TKKPFKQKGT GNARQGSLRS VQMRGGGISH GPKVRSHAIK
110 120 130 140 150
LPKKVRKLGL IHALSEKYAE EKLLIIDSLK LDKPKTSILV NLLSKFQGQS
160 170 180 190 200
FFVIDGNKVD INFSLATKNI YNTLIVPQIG ANVYDIIRHE YVLLSQEAVS

FLEERLR
Length:207
Mass (Da):23,288
Last modified:May 1, 1999 - v1
Checksum:iAA652123EB22797E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ235272 Genomic DNA Translation: CAA15098.1
PIRiH71671
RefSeqiNP_221022.1, NC_000963.1
WP_004596200.1, NC_000963.1

Genome annotation databases

EnsemblBacteriaiCAA15098; CAA15098; CAA15098
GeneIDi883872
KEGGirpr:RP658
PATRICifig|272947.5.peg.680

Similar proteinsi

Entry informationi

Entry nameiRL4_RICPR
AccessioniPrimary (citable) accession number: Q9ZCQ6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: February 28, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome