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Q9Z9H5

- RL17_THET8

UniProt

Q9Z9H5 - RL17_THET8

Protein

50S ribosomal protein L17

Gene

rplQ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-1702-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L17UniRule annotation
    Gene namesi
    Name:rplQUniRule annotation
    Synonyms:rpl17UniRule annotation
    Ordered Locus Names:TTHA1663
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11811850S ribosomal protein L17PRO_0000175547Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L32.UniRule annotation

    Protein-protein interaction databases

    STRINGi300852.TTHA1663.

    Structurei

    Secondary structure

    1
    118
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 73
    Helixi15 – 3117
    Beta strandi32 – 376
    Helixi38 – 5720
    Helixi60 – 6910
    Helixi73 – 819
    Helixi83 – 864
    Turni87 – 893
    Beta strandi95 – 1039
    Turni105 – 1073
    Beta strandi110 – 1167

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1GD8X-ray2.30A/B/C/D/E/F/G/H/I1-118[»]
    1YL3X-ray5.5001-118[»]
    2B66X-ray5.90R1-118[»]
    2B9NX-ray6.76R1-118[»]
    2B9PX-ray6.46R1-118[»]
    2HGJX-ray5.00Q1-118[»]
    2HGQX-ray5.50Q1-118[»]
    2HGUX-ray4.51Q1-118[»]
    2J01X-ray2.80R1-118[»]
    2J03X-ray2.80R1-118[»]
    2V47X-ray3.80R1-118[»]
    2V49X-ray3.80R1-118[»]
    2WDIX-ray3.30R1-118[»]
    2WDJX-ray3.30R1-118[»]
    2WDLX-ray3.50R1-118[»]
    2WDNX-ray3.50R1-118[»]
    2WH2X-ray3.45R1-118[»]
    2WH4X-ray3.45R1-118[»]
    2WRJX-ray3.60R1-118[»]
    2WRLX-ray3.60R1-118[»]
    2WROX-ray3.60R1-118[»]
    2WRRX-ray3.60R1-118[»]
    2X9SX-ray3.10R1-118[»]
    2X9UX-ray3.10R1-118[»]
    2XG0X-ray3.20R1-118[»]
    2XG2X-ray3.20R1-118[»]
    2XQEX-ray3.10R1-118[»]
    2XTGelectron microscopy7.80R1-118[»]
    2XUXelectron microscopy7.60R1-118[»]
    2Y0VX-ray3.10R1-118[»]
    2Y0XX-ray3.10R1-118[»]
    2Y0ZX-ray3.10R1-118[»]
    2Y11X-ray3.10R1-118[»]
    2Y13X-ray3.10R1-118[»]
    2Y15X-ray3.10R1-118[»]
    2Y17X-ray3.10R1-118[»]
    2Y19X-ray3.10R1-118[»]
    3FINelectron microscopy6.40R2-118[»]
    3HUXX-ray3.10R1-118[»]
    3HUZX-ray3.10R1-118[»]
    3I8FX-ray3.1001-118[»]
    3I8IX-ray3.1001-118[»]
    3I9CX-ray3.5001-118[»]
    3I9EX-ray3.5001-118[»]
    3KIRX-ray3.30R1-118[»]
    3KITX-ray3.30R1-118[»]
    3KIWX-ray3.60R1-118[»]
    3KIYX-ray3.60R1-118[»]
    3KNIX-ray3.00R1-118[»]
    3KNKX-ray3.00R1-118[»]
    3KNMX-ray3.45R1-118[»]
    3KNOX-ray3.45R1-118[»]
    3TVEX-ray3.1001-118[»]
    3TVHX-ray3.1002-118[»]
    3UXQX-ray3.20R1-118[»]
    3UXRX-ray3.20R1-118[»]
    3UYEX-ray3.0001-118[»]
    3UYGX-ray3.0001-118[»]
    3UZ1X-ray3.3001-118[»]
    3UZ2X-ray3.3001-118[»]
    3UZ8X-ray3.0001-118[»]
    3UZ9X-ray3.0001-118[»]
    3UZFX-ray3.3001-118[»]
    3UZHX-ray3.3001-118[»]
    3UZKX-ray3.3001-118[»]
    3UZNX-ray3.3001-118[»]
    3V23X-ray3.00R1-118[»]
    3V25X-ray3.00R1-118[»]
    3V27X-ray3.10R1-118[»]
    3V29X-ray3.10R1-118[»]
    3V2DX-ray2.70R1-118[»]
    3V2FX-ray2.70R1-118[»]
    3V6WX-ray3.90R1-118[»]
    3V6XX-ray3.90R1-118[»]
    3ZN9X-ray3.10R1-118[»]
    3ZNEX-ray3.10R1-118[»]
    3ZVPX-ray3.80R1-118[»]
    4ABSX-ray3.10R1-118[»]
    4B8GX-ray3.70R1-118[»]
    4B8IX-ray3.70R1-118[»]
    4BTDX-ray2.95R2-118[»]
    4BYCX-ray3.35R1-118[»]
    4BYEX-ray3.35R1-118[»]
    4DHAX-ray3.20R1-118[»]
    4DHCX-ray3.20R1-118[»]
    4EJBX-ray3.52R1-118[»]
    4EJCX-ray3.52R1-118[»]
    4G5LX-ray3.3001-118[»]
    4G5NX-ray3.3001-118[»]
    4G5UX-ray3.1001-118[»]
    4G5WX-ray3.1001-118[»]
    4JUXX-ray2.86R1-118[»]
    4K0MX-ray3.30R2-118[»]
    4K0QX-ray3.30R2-118[»]
    4NVVX-ray3.00R1-118[»]
    4NVXX-ray3.00R1-118[»]
    4NVZX-ray3.10R1-118[»]
    4NW1X-ray3.10R1-118[»]
    ProteinModelPortaliQ9Z9H5.
    SMRiQ9Z9H5. Positions 1-118.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ9Z9H5.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L17P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0203.
    HOGENOMiHOG000019780.
    KOiK02879.
    OMAiRYEDRQG.
    OrthoDBiEOG6GR3GR.
    PhylomeDBiQ9Z9H5.

    Family and domain databases

    Gene3Di3.90.1030.10. 1 hit.
    HAMAPiMF_01368. Ribosomal_L17.
    InterProiIPR000456. Ribosomal_L17.
    [Graphical view]
    PANTHERiPTHR14413. PTHR14413. 1 hit.
    PfamiPF01196. Ribosomal_L17. 1 hit.
    [Graphical view]
    SUPFAMiSSF64263. SSF64263. 1 hit.
    TIGRFAMsiTIGR00059. L17. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9Z9H5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH    50
    LIHLAKRGDL HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL 100
    AERRRGDGAP LALVELVE 118
    Length:118
    Mass (Da):13,715
    Last modified:May 1, 1999 - v1
    Checksum:iC9B8DD552F6C42AF
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti3 – 31H → A AA sequence (PubMed:11154066)Curated
    Sequence conflicti13 – 131H → A AA sequence (PubMed:11154066)Curated

    Mass spectrometryi

    Molecular mass is 13717 Da from positions 1 - 118. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75550.1.
    AP008226 Genomic DNA. Translation: BAD71486.1.
    RefSeqiYP_144929.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD71486; BAD71486; BAD71486.
    GeneIDi3168022.
    KEGGittj:TTHA1663.
    PATRICi23958281. VBITheThe93045_1633.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB024328 Genomic DNA. Translation: BAA75550.1 .
    AP008226 Genomic DNA. Translation: BAD71486.1 .
    RefSeqi YP_144929.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1GD8 X-ray 2.30 A/B/C/D/E/F/G/H/I 1-118 [» ]
    1YL3 X-ray 5.50 0 1-118 [» ]
    2B66 X-ray 5.90 R 1-118 [» ]
    2B9N X-ray 6.76 R 1-118 [» ]
    2B9P X-ray 6.46 R 1-118 [» ]
    2HGJ X-ray 5.00 Q 1-118 [» ]
    2HGQ X-ray 5.50 Q 1-118 [» ]
    2HGU X-ray 4.51 Q 1-118 [» ]
    2J01 X-ray 2.80 R 1-118 [» ]
    2J03 X-ray 2.80 R 1-118 [» ]
    2V47 X-ray 3.80 R 1-118 [» ]
    2V49 X-ray 3.80 R 1-118 [» ]
    2WDI X-ray 3.30 R 1-118 [» ]
    2WDJ X-ray 3.30 R 1-118 [» ]
    2WDL X-ray 3.50 R 1-118 [» ]
    2WDN X-ray 3.50 R 1-118 [» ]
    2WH2 X-ray 3.45 R 1-118 [» ]
    2WH4 X-ray 3.45 R 1-118 [» ]
    2WRJ X-ray 3.60 R 1-118 [» ]
    2WRL X-ray 3.60 R 1-118 [» ]
    2WRO X-ray 3.60 R 1-118 [» ]
    2WRR X-ray 3.60 R 1-118 [» ]
    2X9S X-ray 3.10 R 1-118 [» ]
    2X9U X-ray 3.10 R 1-118 [» ]
    2XG0 X-ray 3.20 R 1-118 [» ]
    2XG2 X-ray 3.20 R 1-118 [» ]
    2XQE X-ray 3.10 R 1-118 [» ]
    2XTG electron microscopy 7.80 R 1-118 [» ]
    2XUX electron microscopy 7.60 R 1-118 [» ]
    2Y0V X-ray 3.10 R 1-118 [» ]
    2Y0X X-ray 3.10 R 1-118 [» ]
    2Y0Z X-ray 3.10 R 1-118 [» ]
    2Y11 X-ray 3.10 R 1-118 [» ]
    2Y13 X-ray 3.10 R 1-118 [» ]
    2Y15 X-ray 3.10 R 1-118 [» ]
    2Y17 X-ray 3.10 R 1-118 [» ]
    2Y19 X-ray 3.10 R 1-118 [» ]
    3FIN electron microscopy 6.40 R 2-118 [» ]
    3HUX X-ray 3.10 R 1-118 [» ]
    3HUZ X-ray 3.10 R 1-118 [» ]
    3I8F X-ray 3.10 0 1-118 [» ]
    3I8I X-ray 3.10 0 1-118 [» ]
    3I9C X-ray 3.50 0 1-118 [» ]
    3I9E X-ray 3.50 0 1-118 [» ]
    3KIR X-ray 3.30 R 1-118 [» ]
    3KIT X-ray 3.30 R 1-118 [» ]
    3KIW X-ray 3.60 R 1-118 [» ]
    3KIY X-ray 3.60 R 1-118 [» ]
    3KNI X-ray 3.00 R 1-118 [» ]
    3KNK X-ray 3.00 R 1-118 [» ]
    3KNM X-ray 3.45 R 1-118 [» ]
    3KNO X-ray 3.45 R 1-118 [» ]
    3TVE X-ray 3.10 0 1-118 [» ]
    3TVH X-ray 3.10 0 2-118 [» ]
    3UXQ X-ray 3.20 R 1-118 [» ]
    3UXR X-ray 3.20 R 1-118 [» ]
    3UYE X-ray 3.00 0 1-118 [» ]
    3UYG X-ray 3.00 0 1-118 [» ]
    3UZ1 X-ray 3.30 0 1-118 [» ]
    3UZ2 X-ray 3.30 0 1-118 [» ]
    3UZ8 X-ray 3.00 0 1-118 [» ]
    3UZ9 X-ray 3.00 0 1-118 [» ]
    3UZF X-ray 3.30 0 1-118 [» ]
    3UZH X-ray 3.30 0 1-118 [» ]
    3UZK X-ray 3.30 0 1-118 [» ]
    3UZN X-ray 3.30 0 1-118 [» ]
    3V23 X-ray 3.00 R 1-118 [» ]
    3V25 X-ray 3.00 R 1-118 [» ]
    3V27 X-ray 3.10 R 1-118 [» ]
    3V29 X-ray 3.10 R 1-118 [» ]
    3V2D X-ray 2.70 R 1-118 [» ]
    3V2F X-ray 2.70 R 1-118 [» ]
    3V6W X-ray 3.90 R 1-118 [» ]
    3V6X X-ray 3.90 R 1-118 [» ]
    3ZN9 X-ray 3.10 R 1-118 [» ]
    3ZNE X-ray 3.10 R 1-118 [» ]
    3ZVP X-ray 3.80 R 1-118 [» ]
    4ABS X-ray 3.10 R 1-118 [» ]
    4B8G X-ray 3.70 R 1-118 [» ]
    4B8I X-ray 3.70 R 1-118 [» ]
    4BTD X-ray 2.95 R 2-118 [» ]
    4BYC X-ray 3.35 R 1-118 [» ]
    4BYE X-ray 3.35 R 1-118 [» ]
    4DHA X-ray 3.20 R 1-118 [» ]
    4DHC X-ray 3.20 R 1-118 [» ]
    4EJB X-ray 3.52 R 1-118 [» ]
    4EJC X-ray 3.52 R 1-118 [» ]
    4G5L X-ray 3.30 0 1-118 [» ]
    4G5N X-ray 3.30 0 1-118 [» ]
    4G5U X-ray 3.10 0 1-118 [» ]
    4G5W X-ray 3.10 0 1-118 [» ]
    4JUX X-ray 2.86 R 1-118 [» ]
    4K0M X-ray 3.30 R 2-118 [» ]
    4K0Q X-ray 3.30 R 2-118 [» ]
    4NVV X-ray 3.00 R 1-118 [» ]
    4NVX X-ray 3.00 R 1-118 [» ]
    4NVZ X-ray 3.10 R 1-118 [» ]
    4NW1 X-ray 3.10 R 1-118 [» ]
    ProteinModelPortali Q9Z9H5.
    SMRi Q9Z9H5. Positions 1-118.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA1663.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD71486 ; BAD71486 ; BAD71486 .
    GeneIDi 3168022.
    KEGGi ttj:TTHA1663.
    PATRICi 23958281. VBITheThe93045_1633.

    Phylogenomic databases

    eggNOGi COG0203.
    HOGENOMi HOG000019780.
    KOi K02879.
    OMAi RYEDRQG.
    OrthoDBi EOG6GR3GR.
    PhylomeDBi Q9Z9H5.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-1702-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q9Z9H5.

    Family and domain databases

    Gene3Di 3.90.1030.10. 1 hit.
    HAMAPi MF_01368. Ribosomal_L17.
    InterProi IPR000456. Ribosomal_L17.
    [Graphical view ]
    PANTHERi PTHR14413. PTHR14413. 1 hit.
    Pfami PF01196. Ribosomal_L17. 1 hit.
    [Graphical view ]
    SUPFAMi SSF64263. SSF64263. 1 hit.
    TIGRFAMsi TIGR00059. L17. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
      Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
      J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
      Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
      Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-15.
    4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
      Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
      Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
    5. "The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus."
      RIKEN structural genomics initiative (RSGI)
      Submitted (JAN-2003) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 1-118.
    6. "Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon."
      Petry S., Brodersen D.E., Murphy F.V. IV, Dunham C.M., Selmer M., Tarry M.J., Kelley A.C., Ramakrishnan V.
      Cell 123:1255-1266(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.9 ANGSTROMS) OF 1-118 OF THE RIBOSOME ALONE OR IN COMPLEX WITH RELEASE FACTOR 1 OR RELEASE FACTOR 2.
    7. "Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding."
      Jenner L., Romby P., Rees B., Schulze-Briese C., Springer M., Ehresmann C., Ehresmann B., Moras D., Yusupova G., Yusupov M.
      Science 308:120-123(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF 14-118.
    8. Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 1-118 OF THE RIBOSOME.

    Entry informationi

    Entry nameiRL17_THET8
    AccessioniPrimary (citable) accession number: Q9Z9H5
    Secondary accession number(s): Q5SHR7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 105 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3