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Q9Z9H5

- RL17_THET8

UniProt

Q9Z9H5 - RL17_THET8

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Protein
50S ribosomal protein L17
Gene
rplQ, rpl17, TTHA1663
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-1702-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L17
Gene namesi
Name:rplQ
Synonyms:rpl17
Ordered Locus Names:TTHA1663
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11811850S ribosomal protein L17UniRule annotation
PRO_0000175547Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L32 By similarity.

Protein-protein interaction databases

STRINGi300852.TTHA1663.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 73
Helixi15 – 3117
Beta strandi32 – 376
Helixi38 – 5720
Helixi60 – 6910
Helixi73 – 819
Helixi83 – 864
Turni87 – 893
Beta strandi95 – 1039
Turni105 – 1073
Beta strandi110 – 1167

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1GD8X-ray2.30A/B/C/D/E/F/G/H/I1-118[»]
1YL3X-ray5.5001-118[»]
2B66X-ray5.90R1-118[»]
2B9NX-ray6.76R1-118[»]
2B9PX-ray6.46R1-118[»]
2HGJX-ray5.00Q1-118[»]
2HGQX-ray5.50Q1-118[»]
2HGUX-ray4.51Q1-118[»]
2J01X-ray2.80R1-118[»]
2J03X-ray2.80R1-118[»]
2V47X-ray3.80R1-118[»]
2V49X-ray3.80R1-118[»]
2WDIX-ray3.30R1-118[»]
2WDJX-ray3.30R1-118[»]
2WDLX-ray3.50R1-118[»]
2WDNX-ray3.50R1-118[»]
2WH2X-ray3.45R1-118[»]
2WH4X-ray3.45R1-118[»]
2WRJX-ray3.60R1-118[»]
2WRLX-ray3.60R1-118[»]
2WROX-ray3.60R1-118[»]
2WRRX-ray3.60R1-118[»]
2X9SX-ray3.10R1-118[»]
2X9UX-ray3.10R1-118[»]
2XG0X-ray3.20R1-118[»]
2XG2X-ray3.20R1-118[»]
2XQEX-ray3.10R1-118[»]
2XTGelectron microscopy7.80R1-118[»]
2XUXelectron microscopy7.60R1-118[»]
2Y0VX-ray3.10R1-118[»]
2Y0XX-ray3.10R1-118[»]
2Y0ZX-ray3.10R1-118[»]
2Y11X-ray3.10R1-118[»]
2Y13X-ray3.10R1-118[»]
2Y15X-ray3.10R1-118[»]
2Y17X-ray3.10R1-118[»]
2Y19X-ray3.10R1-118[»]
3FINelectron microscopy6.40R2-118[»]
3HUXX-ray3.10R1-118[»]
3HUZX-ray3.10R1-118[»]
3I8FX-ray3.1001-118[»]
3I8IX-ray3.1001-118[»]
3I9CX-ray3.5001-118[»]
3I9EX-ray3.5001-118[»]
3KIRX-ray3.30R1-118[»]
3KITX-ray3.30R1-118[»]
3KIWX-ray3.60R1-118[»]
3KIYX-ray3.60R1-118[»]
3KNIX-ray3.00R1-118[»]
3KNKX-ray3.00R1-118[»]
3KNMX-ray3.45R1-118[»]
3KNOX-ray3.45R1-118[»]
3TVEX-ray3.1001-118[»]
3TVHX-ray3.1002-118[»]
3UXQX-ray3.20R1-118[»]
3UXRX-ray3.20R1-118[»]
3UYEX-ray3.0001-118[»]
3UYGX-ray3.0001-118[»]
3UZ1X-ray3.3001-118[»]
3UZ2X-ray3.3001-118[»]
3UZ8X-ray3.0001-118[»]
3UZ9X-ray3.0001-118[»]
3UZFX-ray3.3001-118[»]
3UZHX-ray3.3001-118[»]
3UZKX-ray3.3001-118[»]
3UZNX-ray3.3001-118[»]
3V23X-ray3.00R1-118[»]
3V25X-ray3.00R1-118[»]
3V27X-ray3.10R1-118[»]
3V29X-ray3.10R1-118[»]
3V2DX-ray2.70R1-118[»]
3V2FX-ray2.70R1-118[»]
3V6WX-ray3.90R1-118[»]
3V6XX-ray3.90R1-118[»]
3ZN9X-ray3.10R1-118[»]
3ZNEX-ray3.10R1-118[»]
3ZVPX-ray3.80R1-118[»]
4ABSX-ray3.10R1-118[»]
4B8GX-ray3.70R1-118[»]
4B8IX-ray3.70R1-118[»]
4BTDX-ray2.95R2-118[»]
4BYCX-ray3.35R1-118[»]
4BYEX-ray3.35R1-118[»]
4DHAX-ray3.20R1-118[»]
4DHCX-ray3.20R1-118[»]
4EJBX-ray3.52R1-118[»]
4EJCX-ray3.52R1-118[»]
4G5LX-ray3.3001-118[»]
4G5NX-ray3.3001-118[»]
4G5UX-ray3.1001-118[»]
4G5WX-ray3.1001-118[»]
4JUXX-ray2.86R1-118[»]
4K0MX-ray3.30R2-118[»]
4K0QX-ray3.30R2-118[»]
4NVVX-ray3.00R1-118[»]
4NVXX-ray3.00R1-118[»]
4NVZX-ray3.10R1-118[»]
4NW1X-ray3.10R1-118[»]
ProteinModelPortaliQ9Z9H5.
SMRiQ9Z9H5. Positions 1-118.

Miscellaneous databases

EvolutionaryTraceiQ9Z9H5.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0203.
HOGENOMiHOG000019780.
KOiK02879.
OMAiRYEDRQG.
OrthoDBiEOG6GR3GR.
PhylomeDBiQ9Z9H5.

Family and domain databases

Gene3Di3.90.1030.10. 1 hit.
HAMAPiMF_01368. Ribosomal_L17.
InterProiIPR000456. Ribosomal_L17.
[Graphical view]
PANTHERiPTHR14413. PTHR14413. 1 hit.
PfamiPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
SUPFAMiSSF64263. SSF64263. 1 hit.
TIGRFAMsiTIGR00059. L17. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9Z9H5-1 [UniParc]FASTAAdd to Basket

« Hide

MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH    50
LIHLAKRGDL HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL 100
AERRRGDGAP LALVELVE 118
Length:118
Mass (Da):13,715
Last modified:May 1, 1999 - v1
Checksum:iC9B8DD552F6C42AF
GO

Mass spectrometryi

Molecular mass is 13717 Da from positions 1 - 118. Determined by MALDI. 1 Publication

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti3 – 31H → A AA sequence 1 Publication
Sequence conflicti13 – 131H → A AA sequence 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024328 Genomic DNA. Translation: BAA75550.1.
AP008226 Genomic DNA. Translation: BAD71486.1.
RefSeqiYP_144929.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71486; BAD71486; BAD71486.
GeneIDi3168022.
KEGGittj:TTHA1663.
PATRICi23958281. VBITheThe93045_1633.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB024328 Genomic DNA. Translation: BAA75550.1 .
AP008226 Genomic DNA. Translation: BAD71486.1 .
RefSeqi YP_144929.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1GD8 X-ray 2.30 A/B/C/D/E/F/G/H/I 1-118 [» ]
1YL3 X-ray 5.50 0 1-118 [» ]
2B66 X-ray 5.90 R 1-118 [» ]
2B9N X-ray 6.76 R 1-118 [» ]
2B9P X-ray 6.46 R 1-118 [» ]
2HGJ X-ray 5.00 Q 1-118 [» ]
2HGQ X-ray 5.50 Q 1-118 [» ]
2HGU X-ray 4.51 Q 1-118 [» ]
2J01 X-ray 2.80 R 1-118 [» ]
2J03 X-ray 2.80 R 1-118 [» ]
2V47 X-ray 3.80 R 1-118 [» ]
2V49 X-ray 3.80 R 1-118 [» ]
2WDI X-ray 3.30 R 1-118 [» ]
2WDJ X-ray 3.30 R 1-118 [» ]
2WDL X-ray 3.50 R 1-118 [» ]
2WDN X-ray 3.50 R 1-118 [» ]
2WH2 X-ray 3.45 R 1-118 [» ]
2WH4 X-ray 3.45 R 1-118 [» ]
2WRJ X-ray 3.60 R 1-118 [» ]
2WRL X-ray 3.60 R 1-118 [» ]
2WRO X-ray 3.60 R 1-118 [» ]
2WRR X-ray 3.60 R 1-118 [» ]
2X9S X-ray 3.10 R 1-118 [» ]
2X9U X-ray 3.10 R 1-118 [» ]
2XG0 X-ray 3.20 R 1-118 [» ]
2XG2 X-ray 3.20 R 1-118 [» ]
2XQE X-ray 3.10 R 1-118 [» ]
2XTG electron microscopy 7.80 R 1-118 [» ]
2XUX electron microscopy 7.60 R 1-118 [» ]
2Y0V X-ray 3.10 R 1-118 [» ]
2Y0X X-ray 3.10 R 1-118 [» ]
2Y0Z X-ray 3.10 R 1-118 [» ]
2Y11 X-ray 3.10 R 1-118 [» ]
2Y13 X-ray 3.10 R 1-118 [» ]
2Y15 X-ray 3.10 R 1-118 [» ]
2Y17 X-ray 3.10 R 1-118 [» ]
2Y19 X-ray 3.10 R 1-118 [» ]
3FIN electron microscopy 6.40 R 2-118 [» ]
3HUX X-ray 3.10 R 1-118 [» ]
3HUZ X-ray 3.10 R 1-118 [» ]
3I8F X-ray 3.10 0 1-118 [» ]
3I8I X-ray 3.10 0 1-118 [» ]
3I9C X-ray 3.50 0 1-118 [» ]
3I9E X-ray 3.50 0 1-118 [» ]
3KIR X-ray 3.30 R 1-118 [» ]
3KIT X-ray 3.30 R 1-118 [» ]
3KIW X-ray 3.60 R 1-118 [» ]
3KIY X-ray 3.60 R 1-118 [» ]
3KNI X-ray 3.00 R 1-118 [» ]
3KNK X-ray 3.00 R 1-118 [» ]
3KNM X-ray 3.45 R 1-118 [» ]
3KNO X-ray 3.45 R 1-118 [» ]
3TVE X-ray 3.10 0 1-118 [» ]
3TVH X-ray 3.10 0 2-118 [» ]
3UXQ X-ray 3.20 R 1-118 [» ]
3UXR X-ray 3.20 R 1-118 [» ]
3UYE X-ray 3.00 0 1-118 [» ]
3UYG X-ray 3.00 0 1-118 [» ]
3UZ1 X-ray 3.30 0 1-118 [» ]
3UZ2 X-ray 3.30 0 1-118 [» ]
3UZ8 X-ray 3.00 0 1-118 [» ]
3UZ9 X-ray 3.00 0 1-118 [» ]
3UZF X-ray 3.30 0 1-118 [» ]
3UZH X-ray 3.30 0 1-118 [» ]
3UZK X-ray 3.30 0 1-118 [» ]
3UZN X-ray 3.30 0 1-118 [» ]
3V23 X-ray 3.00 R 1-118 [» ]
3V25 X-ray 3.00 R 1-118 [» ]
3V27 X-ray 3.10 R 1-118 [» ]
3V29 X-ray 3.10 R 1-118 [» ]
3V2D X-ray 2.70 R 1-118 [» ]
3V2F X-ray 2.70 R 1-118 [» ]
3V6W X-ray 3.90 R 1-118 [» ]
3V6X X-ray 3.90 R 1-118 [» ]
3ZN9 X-ray 3.10 R 1-118 [» ]
3ZNE X-ray 3.10 R 1-118 [» ]
3ZVP X-ray 3.80 R 1-118 [» ]
4ABS X-ray 3.10 R 1-118 [» ]
4B8G X-ray 3.70 R 1-118 [» ]
4B8I X-ray 3.70 R 1-118 [» ]
4BTD X-ray 2.95 R 2-118 [» ]
4BYC X-ray 3.35 R 1-118 [» ]
4BYE X-ray 3.35 R 1-118 [» ]
4DHA X-ray 3.20 R 1-118 [» ]
4DHC X-ray 3.20 R 1-118 [» ]
4EJB X-ray 3.52 R 1-118 [» ]
4EJC X-ray 3.52 R 1-118 [» ]
4G5L X-ray 3.30 0 1-118 [» ]
4G5N X-ray 3.30 0 1-118 [» ]
4G5U X-ray 3.10 0 1-118 [» ]
4G5W X-ray 3.10 0 1-118 [» ]
4JUX X-ray 2.86 R 1-118 [» ]
4K0M X-ray 3.30 R 2-118 [» ]
4K0Q X-ray 3.30 R 2-118 [» ]
4NVV X-ray 3.00 R 1-118 [» ]
4NVX X-ray 3.00 R 1-118 [» ]
4NVZ X-ray 3.10 R 1-118 [» ]
4NW1 X-ray 3.10 R 1-118 [» ]
ProteinModelPortali Q9Z9H5.
SMRi Q9Z9H5. Positions 1-118.
ModBasei Search...

Protein-protein interaction databases

STRINGi 300852.TTHA1663.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD71486 ; BAD71486 ; BAD71486 .
GeneIDi 3168022.
KEGGi ttj:TTHA1663.
PATRICi 23958281. VBITheThe93045_1633.

Phylogenomic databases

eggNOGi COG0203.
HOGENOMi HOG000019780.
KOi K02879.
OMAi RYEDRQG.
OrthoDBi EOG6GR3GR.
PhylomeDBi Q9Z9H5.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-1702-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9Z9H5.

Family and domain databases

Gene3Di 3.90.1030.10. 1 hit.
HAMAPi MF_01368. Ribosomal_L17.
InterProi IPR000456. Ribosomal_L17.
[Graphical view ]
PANTHERi PTHR14413. PTHR14413. 1 hit.
Pfami PF01196. Ribosomal_L17. 1 hit.
[Graphical view ]
SUPFAMi SSF64263. SSF64263. 1 hit.
TIGRFAMsi TIGR00059. L17. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
    Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
    J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-15.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. "The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus."
    RIKEN structural genomics initiative (RSGI)
    Submitted (JAN-2003) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 1-118.
  6. "Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon."
    Petry S., Brodersen D.E., Murphy F.V. IV, Dunham C.M., Selmer M., Tarry M.J., Kelley A.C., Ramakrishnan V.
    Cell 123:1255-1266(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.9 ANGSTROMS) OF 1-118 OF THE RIBOSOME ALONE OR IN COMPLEX WITH RELEASE FACTOR 1 OR RELEASE FACTOR 2.
  7. "Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding."
    Jenner L., Romby P., Rees B., Schulze-Briese C., Springer M., Ehresmann C., Ehresmann B., Moras D., Yusupova G., Yusupov M.
    Science 308:120-123(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF 14-118.
  8. Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 1-118 OF THE RIBOSOME.

Entry informationi

Entry nameiRL17_THET8
AccessioniPrimary (citable) accession number: Q9Z9H5
Secondary accession number(s): Q5SHR7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: July 9, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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