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Q9Z9H5 (RL17_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L17
Gene names
Name:rplQ
Synonyms:rpl17
Ordered Locus Names:TTHA1663
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length118 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L32 By similarity.

Sequence similarities

Belongs to the ribosomal protein L17P family.

Mass spectrometry

Molecular mass is 13717 Da from positions 1 - 118. Determined by MALDI. Ref.4

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11811850S ribosomal protein L17 HAMAP-Rule MF_01368
PRO_0000175547

Experimental info

Sequence conflict31H → A AA sequence Ref.3
Sequence conflict131H → A AA sequence Ref.3

Secondary structure

.................... 118
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q9Z9H5 [UniParc].

Last modified May 1, 1999. Version 1.
Checksum: C9B8DD552F6C42AF

FASTA11813,715
        10         20         30         40         50         60 
MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH LIHLAKRGDL 

        70         80         90        100        110 
HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL AERRRGDGAP LALVELVE 

« Hide

References

« Hide 'large scale' references
[1]"Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein."
Wada T., Yamazaki T., Kuramitsu S., Kyogoku Y.
J. Biochem. 125:143-150(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-15.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"The crystal structure of the bacteria-specific L17 ribosomal protein from Thermus thermophilus."
RIKEN structural genomics initiative (RSGI)
Submitted (JAN-2003) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 1-118.
[6]"Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon."
Petry S., Brodersen D.E., Murphy F.V. IV, Dunham C.M., Selmer M., Tarry M.J., Kelley A.C., Ramakrishnan V.
Cell 123:1255-1266(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.9 ANGSTROMS) OF 1-118 OF THE RIBOSOME ALONE OR IN COMPLEX WITH RELEASE FACTOR 1 OR RELEASE FACTOR 2.
[7]"Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding."
Jenner L., Romby P., Rees B., Schulze-Briese C., Springer M., Ehresmann C., Ehresmann B., Moras D., Yusupova G., Yusupov M.
Science 308:120-123(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (5.5 ANGSTROMS) OF 14-118.
[8]"Structure of the 70S ribosome complexed with mRNA and tRNA."
Selmer M., Dunham C.M., Murphy F.V. IV, Weixlbaumer A., Petry S., Kelley A.C., Weir J.R., Ramakrishnan V.
Science 313:1935-1942(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 1-118 OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB024328 Genomic DNA. Translation: BAA75550.1.
AP008226 Genomic DNA. Translation: BAD71486.1.
RefSeqYP_144929.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1GD8X-ray2.30A/B/C/D/E/F/G/H/I1-118[»]
1YL3X-ray5.5001-118[»]
2B66X-ray5.90R1-118[»]
2B9NX-ray6.76R1-118[»]
2B9PX-ray6.46R1-118[»]
2HGJX-ray5.00Q1-118[»]
2HGQX-ray5.50Q1-118[»]
2HGUX-ray4.51Q1-118[»]
2J01X-ray2.80R1-118[»]
2J03X-ray2.80R1-118[»]
2V47X-ray3.80R1-118[»]
2V49X-ray3.80R1-118[»]
2WDIX-ray3.30R1-118[»]
2WDJX-ray3.30R1-118[»]
2WDLX-ray3.50R1-118[»]
2WDNX-ray3.50R1-118[»]
2WH2X-ray3.45R1-118[»]
2WH4X-ray3.45R1-118[»]
2WRJX-ray3.60R1-118[»]
2WRLX-ray3.60R1-118[»]
2WROX-ray3.60R1-118[»]
2WRRX-ray3.60R1-118[»]
2X9SX-ray3.10R1-118[»]
2X9UX-ray3.10R1-118[»]
2XG0X-ray3.20R1-118[»]
2XG2X-ray3.20R1-118[»]
2XQEX-ray3.10R1-118[»]
2XTGelectron microscopy7.80R1-118[»]
2XUXelectron microscopy7.60R1-118[»]
2Y0VX-ray3.10R1-118[»]
2Y0XX-ray3.10R1-118[»]
2Y0ZX-ray3.10R1-118[»]
2Y11X-ray3.10R1-118[»]
2Y13X-ray3.10R1-118[»]
2Y15X-ray3.10R1-118[»]
2Y17X-ray3.10R1-118[»]
2Y19X-ray3.10R1-118[»]
3FINelectron microscopy6.40R2-118[»]
3HUXX-ray3.10R1-118[»]
3HUZX-ray3.10R1-118[»]
3I8FX-ray3.1001-118[»]
3I8IX-ray3.1001-118[»]
3I9CX-ray3.5001-118[»]
3I9EX-ray3.5001-118[»]
3KIRX-ray3.30R1-118[»]
3KITX-ray3.30R1-118[»]
3KIWX-ray3.60R1-118[»]
3KIYX-ray3.60R1-118[»]
3KNIX-ray3.00R1-118[»]
3KNKX-ray3.00R1-118[»]
3KNMX-ray3.45R1-118[»]
3KNOX-ray3.45R1-118[»]
3TVEX-ray3.1001-118[»]
3TVHX-ray3.1002-118[»]
3UXQX-ray3.20R1-118[»]
3UXRX-ray3.20R1-118[»]
3UYEX-ray3.0001-118[»]
3UYGX-ray3.0001-118[»]
3UZ1X-ray3.3001-118[»]
3UZ2X-ray3.3001-118[»]
3UZ8X-ray3.0001-118[»]
3UZ9X-ray3.0001-118[»]
3UZFX-ray3.3001-118[»]
3UZHX-ray3.3001-118[»]
3UZKX-ray3.3001-118[»]
3UZNX-ray3.3001-118[»]
3V23X-ray3.00R1-118[»]
3V25X-ray3.00R1-118[»]
3V27X-ray3.10R1-118[»]
3V29X-ray3.10R1-118[»]
3V2DX-ray2.70R1-118[»]
3V2FX-ray2.70R1-118[»]
3V6WX-ray3.90R1-118[»]
3V6XX-ray3.90R1-118[»]
3ZN9X-ray3.10R1-118[»]
3ZNEX-ray3.10R1-118[»]
3ZVPX-ray3.80R1-118[»]
4ABSX-ray3.10R1-118[»]
4B8GX-ray3.70R1-118[»]
4B8IX-ray3.70R1-118[»]
4BTDX-ray2.95R2-118[»]
4BYCX-ray3.35R1-118[»]
4BYEX-ray3.35R1-118[»]
4DHAX-ray3.20R1-118[»]
4DHCX-ray3.20R1-118[»]
4EJBX-ray3.52R1-118[»]
4EJCX-ray3.52R1-118[»]
4G5LX-ray3.3001-118[»]
4G5NX-ray3.3001-118[»]
4G5UX-ray3.1001-118[»]
4G5WX-ray3.1001-118[»]
4JUXX-ray2.86R1-118[»]
4K0MX-ray3.30R2-118[»]
4K0QX-ray3.30R2-118[»]
ProteinModelPortalQ9Z9H5.
SMRQ9Z9H5. Positions 1-118.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING300852.TTHA1663.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD71486; BAD71486; BAD71486.
GeneID3168022.
KEGGttj:TTHA1663.
PATRIC23958281. VBITheThe93045_1633.

Phylogenomic databases

eggNOGCOG0203.
HOGENOMHOG000019780.
KOK02879.
OMARYEDRQG.
OrthoDBEOG6GR3GR.
ProtClustDBPRK05591.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-1702-MONOMER.

Family and domain databases

Gene3D3.90.1030.10. 1 hit.
HAMAPMF_01368. Ribosomal_L17.
InterProIPR000456. Ribosomal_L17.
[Graphical view]
PANTHERPTHR14413. PTHR14413. 1 hit.
PfamPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
SUPFAMSSF64263. SSF64263. 1 hit.
TIGRFAMsTIGR00059. L17. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ9Z9H5.

Entry information

Entry nameRL17_THET8
AccessionPrimary (citable) accession number: Q9Z9H5
Secondary accession number(s): Q5SHR7
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: February 19, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references