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Protein

50S ribosomal protein L17

Gene

rplQ

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L17UniRule annotation
Gene namesi
Name:rplQUniRule annotation
Synonyms:rpl17UniRule annotation
Ordered Locus Names:TTHA1663
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001755471 – 11850S ribosomal protein L17Add BLAST118

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L32.UniRule annotation

Protein-protein interaction databases

STRINGi300852.TTHA1663.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi15 – 31Combined sources17
Beta strandi32 – 37Combined sources6
Helixi38 – 57Combined sources20
Helixi60 – 69Combined sources10
Helixi73 – 81Combined sources9
Helixi83 – 86Combined sources4
Beta strandi95 – 103Combined sources9
Turni105 – 107Combined sources3
Beta strandi110 – 116Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GD8X-ray2.30A/B/C/D/E/F/G/H/I1-118[»]
1VVJX-ray3.44RR/YR1-118[»]
1VY4X-ray2.60BR/DR1-118[»]
1VY5X-ray2.55BR/DR1-118[»]
1VY6X-ray2.90BR/DR1-118[»]
1VY7X-ray2.80BR/DR1-118[»]
4L47X-ray3.22RR/YR1-118[»]
4L71X-ray3.90RR/YR1-118[»]
4LELX-ray3.90RR/YR1-118[»]
4LFZX-ray3.92RR/YR1-118[»]
4LNTX-ray2.94RR/YR1-118[»]
4LSKX-ray3.48RR/YR1-118[»]
4LT8X-ray3.14RR/YR1-118[»]
4P6FX-ray3.60RR/YR1-118[»]
4P70X-ray3.68RR/YR1-118[»]
4TUAX-ray3.60RR/YR1-118[»]
4TUBX-ray3.60RR/YR1-118[»]
4TUCX-ray3.60RR/YR1-118[»]
4TUDX-ray3.60RR/YR1-118[»]
4TUEX-ray3.50RR/YR1-118[»]
4V4PX-ray5.50A01-118[»]
4V4RX-ray5.90BR1-118[»]
4V4SX-ray6.76BR1-118[»]
4V4TX-ray6.46BR1-118[»]
4V4XX-ray5.00BQ1-118[»]
4V4YX-ray5.50BQ1-118[»]
4V4ZX-ray4.51BQ1-118[»]
4V51X-ray2.80BR/DR1-118[»]
4V5AX-ray3.50BR/DR1-118[»]
4V5CX-ray3.30BR/DR1-118[»]
4V5DX-ray3.50BR/DR1-118[»]
4V5EX-ray3.45BR/DR1-118[»]
4V5FX-ray3.60BR/DR1-118[»]
4V5GX-ray3.60BR/DR1-118[»]
4V5JX-ray3.10BR/DR1-118[»]
4V5KX-ray3.20BR/DR1-118[»]
4V5LX-ray3.10BR1-118[»]
4V5Melectron microscopy7.80BR1-118[»]
4V5Nelectron microscopy7.60BR1-118[»]
4V5PX-ray3.10BR/DR1-118[»]
4V5QX-ray3.10BR/DR1-118[»]
4V5RX-ray3.10BR/DR1-118[»]
4V5SX-ray3.10BR/DR1-118[»]
4V68electron microscopy6.40BR2-118[»]
4V6AX-ray3.10BR/DR1-118[»]
4V6FX-ray3.10A0/D01-118[»]
4V6GX-ray3.50B0/D01-118[»]
4V7JX-ray3.30AR/BR1-118[»]
4V7KX-ray3.60AR/BR1-118[»]
4V7LX-ray3.00BR/DR1-118[»]
4V7MX-ray3.45BR/DR1-118[»]
4V7WX-ray3.00BR/DR1-118[»]
4V7XX-ray3.00BR/DR1-118[»]
4V7YX-ray3.00BR/DR1-118[»]
4V7ZX-ray3.10BR/DR1-118[»]
4V87X-ray3.10A0/D01-118[»]
4V8AX-ray3.20AR/BR1-118[»]
4V8BX-ray3.00B0/D01-118[»]
4V8CX-ray3.30A0/B01-118[»]
4V8DX-ray3.00B0/D01-118[»]
4V8EX-ray3.30A0/C01-118[»]
4V8FX-ray3.30A0/D01-118[»]
4V8GX-ray3.00BR/DR1-118[»]
4V8HX-ray3.10BR/DR1-118[»]
4V8IX-ray2.70BR/DR1-118[»]
4V8JX-ray3.90BR/DR1-118[»]
4V8NX-ray3.10BR/DR1-118[»]
4V8OX-ray3.80BR1-118[»]
4V8QX-ray3.10AR1-118[»]
4V8UX-ray3.70BR/DR1-118[»]
4V8XX-ray3.35BR/DR1-118[»]
4V90X-ray2.95BR2-118[»]
4V95X-ray3.20BR/DR1-118[»]
4V97X-ray3.52BR/DR1-118[»]
4V9AX-ray3.30B0/D01-118[»]
4V9BX-ray3.10B0/D01-118[»]
4V9HX-ray2.86BR1-118[»]
4V9IX-ray3.30BR/DR2-118[»]
4V9RX-ray3.00BR/DR1-118[»]
4V9SX-ray3.10BR/DR1-118[»]
4W2EX-ray2.90R1-118[»]
4W2FX-ray2.40BR/DR1-118[»]
4W2GX-ray2.55BR/DR1-118[»]
4W2HX-ray2.70BR/DR1-118[»]
4W2IX-ray2.70BR/DR1-118[»]
4W4GX-ray3.30RR/YR1-118[»]
4WPOX-ray2.80AR/CR1-118[»]
4WQ1X-ray3.1055/981-118[»]
4WQFX-ray2.80AR/CR1-118[»]
4WQRX-ray3.1555/981-118[»]
4WQUX-ray2.80AR/CR1-118[»]
4WQYX-ray2.80AR/CR1-118[»]
4WR6X-ray3.0555/981-118[»]
4WRAX-ray3.0555/981-118[»]
4WROX-ray3.05981-118[»]
4WSDX-ray2.9555/981-118[»]
4WSMX-ray3.3055/981-118[»]
4WT1X-ray3.0555/981-118[»]
4WT8X-ray3.40CQ/DQ2-118[»]
4WU1X-ray3.2055/981-118[»]
4WZDX-ray3.1055/981-118[»]
4WZOX-ray3.3055/981-118[»]
4Y4OX-ray2.301R/2R1-118[»]
4Y4PX-ray2.501R/2R1-118[»]
4YPBX-ray3.40RR/YR1-118[»]
4YZVX-ray3.10RR/YR1-118[»]
4Z3SX-ray2.651R/2R1-118[»]
4Z8CX-ray2.901R/2R1-118[»]
4ZERX-ray3.101R/2R1-118[»]
4ZSNX-ray3.60RR/YR1-118[»]
5A9Zelectron microscopy4.70AO2-118[»]
5AA0electron microscopy5.00AO2-118[»]
5CZPX-ray3.30RR/YR1-118[»]
5D8BX-ray3.63HB/L1-118[»]
5DFEX-ray3.10RR/YR1-118[»]
5DOXX-ray3.101R/2R1-118[»]
5DOYX-ray2.601R/2R1-118[»]
5E7KX-ray3.2055/981-118[»]
5E81X-ray2.9555/981-118[»]
5EL4X-ray3.1555/981-118[»]
5EL5X-ray3.1555/981-118[»]
5EL6X-ray3.1055/981-118[»]
5EL7X-ray3.1555/981-118[»]
5F8KX-ray2.801R/2R1-118[»]
5FDUX-ray2.901R/2R1-118[»]
5FDVX-ray2.801R/2R1-118[»]
5HAUX-ray3.001P/2P1-118[»]
5HCPX-ray2.891R/2R1-118[»]
5HCQX-ray2.801R/2R1-118[»]
5HCRX-ray2.801R/2R1-118[»]
5HD1X-ray2.701R/2R1-118[»]
5IB7X-ray2.9955/981-118[»]
5IB8X-ray3.1355/981-118[»]
5IBBX-ray2.9655/981-118[»]
5IMQelectron microscopy3.80j1-118[»]
5IMRelectron microscopy-j1-118[»]
5J30X-ray3.20RR/YR1-118[»]
5J3CX-ray3.04RR/YR1-118[»]
5J4BX-ray2.601R/2R1-118[»]
5J4CX-ray2.801R/2R1-118[»]
5J8BX-ray2.60R1-118[»]
ProteinModelPortaliQ9Z9H5.
SMRiQ9Z9H5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9Z9H5.

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL17 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108ZT0. Bacteria.
COG0203. LUCA.
HOGENOMiHOG000019780.
KOiK02879.
OMAiTSHRLAM.
PhylomeDBiQ9Z9H5.

Family and domain databases

Gene3Di3.90.1030.10. 1 hit.
HAMAPiMF_01368. Ribosomal_L17. 1 hit.
InterProiView protein in InterPro
IPR000456. Ribosomal_L17.
PANTHERiPTHR14413. PTHR14413. 1 hit.
PfamiView protein in Pfam
PF01196. Ribosomal_L17. 1 hit.
SUPFAMiSSF64263. SSF64263. 1 hit.
TIGRFAMsiTIGR00059. L17. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9Z9H5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH
60 70 80 90 100
LIHLAKRGDL HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL
110
AERRRGDGAP LALVELVE
Length:118
Mass (Da):13,715
Last modified:May 1, 1999 - v1
Checksum:iC9B8DD552F6C42AF
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti3H → A AA sequence (PubMed:11154066).Curated1
Sequence conflicti13H → A AA sequence (PubMed:11154066).Curated1

Mass spectrometryi

Molecular mass is 13717 Da from positions 1 - 118. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB024328 Genomic DNA. Translation: BAA75550.1.
AP008226 Genomic DNA. Translation: BAD71486.1.
RefSeqiWP_008633358.1. NC_006461.1.
YP_144929.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD71486; BAD71486; BAD71486.
GeneIDi3168022.
KEGGittj:TTHA1663.
PATRICifig|300852.9.peg.1633.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL17_THET8
AccessioniPrimary (citable) accession number: Q9Z9H5
Secondary accession number(s): Q5SHR7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: June 7, 2017
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families