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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathway: glycogen biosynthesis

This protein is involved in the pathway glycogen biosynthesis, which is part of Glycan biosynthesis.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway glycogen biosynthesis and in Glycan biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei400 – 4001NucleophileUniRule annotation
Active sitei453 – 4531Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciCPNE115711:GI7B-292-MONOMER.
CPNE115713:GHEY-491-MONOMER.
CPNE138677:GH8N-484-MONOMER.
CPNE182082:GH4N-506-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:CPn_0475, CP_0279, CpB0494
OrganismiChlamydia pneumoniae (Chlamydophila pneumoniae)
Taxonomic identifieri83558 [NCBI]
Taxonomic lineageiBacteriaChlamydiaeChlamydialesChlamydiaceaeChlamydia/Chlamydophila groupChlamydia
ProteomesiUP000000583 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7207201,4-alpha-glucan branching enzyme GlgBPRO_0000188693Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi115713.CPn0475.

Structurei

3D structure databases

ProteinModelPortaliQ9Z876.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiYWFEQFH.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9Z876-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDKLIHPWD LDLLVSGRQK DPHKLLGILA SEDSSDHIVI FRPGAHTVAI
60 70 80 90 100
ELLGELHHAV AYRSGLFFLS VPKGIGHGDY RVYHQNGLLA HDPYAFPPLW
110 120 130 140 150
GEIDSFLFHR GTHYRIYERM GAIPMEVQGI SGVLFVLWAP HAQRVSVVGD
160 170 180 190 200
FNFWHGLVNP LRKISDQGIW ELFVPGLGEG IRYKWEIVTQ SGNVIVKTDP
210 220 230 240 250
YGKSFDPPPQ GTARVADSES YSWSDHRWME RRSKQSEGPV TIYEVHLGSW
260 270 280 290 300
QWQEGRPLSY SEMAHRLASY CKEMHYTHVE LLPITEHPLN ESWGYQVTGY
310 320 330 340 350
YAPTSRYGTL QEFQYFVDYL HKENIGIILD WVPGHFPVDA FALASFDGEP
360 370 380 390 400
LYEYTGHSQA LHPHWNTFTF DYSRHEVTNF LLGSALFWLD KMHIDGLRVD
410 420 430 440 450
AVASMLYRDY GREDGEWTPN IYGGKENLES IEFLKHLNSV IHKEFSGVLT
460 470 480 490 500
FAEESTAFPG VTKDVDQGGL GFDYKWNLGW MHDTFHYFMK DPMYRKYHQK
510 520 530 540 550
DLTFSLWYAF QESFILPLSH DEVVHGKGSL VNKLPGDTWT RFAQMRVLLS
560 570 580 590 600
YQICLPGKKL LFMGGEFGQY GEWSPDRPLD WELLNHHYHK TLRNCVSALN
610 620 630 640 650
ALYIHQPYLW MQESSQECFH WVDFHDIENN VIAYYRFAGS NRSSALLCVH
660 670 680 690 700
HFSASTFPSY VLRCEGVKHC ELLLNTDDES FGGSGKGNRA PVVCQDQGVA
710 720
WGLDIELPPL ATVIYLVTFF
Length:720
Mass (Da):82,839
Last modified:May 1, 1999 - v1
Checksum:iCCF5FD309971C87B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001363 Genomic DNA. Translation: AAD18615.1.
AE002161 Genomic DNA. Translation: AAF38137.1.
BA000008 Genomic DNA. Translation: BAA98681.1.
AE009440 Genomic DNA. Translation: AAP98425.1.
PIRiE72074.
G86549.
RefSeqiNP_224671.1. NC_000922.1.
NP_300530.1. NC_002491.1.
NP_444829.1. NC_002179.2.
NP_876768.1. NC_005043.1.

Genome annotation databases

EnsemblBacteriaiAAD18615; AAD18615; CPn_0475.
AAF38137; AAF38137; CP_0279.
AAP98425; AAP98425; CpB0494.
BAA98681; BAA98681; BAA98681.
GeneIDi895645.
KEGGicpa:CP0279.
cpj:CPj0475.
cpn:CPn0475.
cpt:CpB0494.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE001363 Genomic DNA. Translation: AAD18615.1.
AE002161 Genomic DNA. Translation: AAF38137.1.
BA000008 Genomic DNA. Translation: BAA98681.1.
AE009440 Genomic DNA. Translation: AAP98425.1.
PIRiE72074.
G86549.
RefSeqiNP_224671.1. NC_000922.1.
NP_300530.1. NC_002491.1.
NP_444829.1. NC_002179.2.
NP_876768.1. NC_005043.1.

3D structure databases

ProteinModelPortaliQ9Z876.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi115713.CPn0475.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD18615; AAD18615; CPn_0475.
AAF38137; AAF38137; CP_0279.
AAP98425; AAP98425; CpB0494.
BAA98681; BAA98681; BAA98681.
GeneIDi895645.
KEGGicpa:CP0279.
cpj:CPj0475.
cpn:CPn0475.
cpt:CpB0494.

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiYWFEQFH.
OrthoDBiEOG6JX7GT.

Enzyme and pathway databases

UniPathwayiUPA00164.
BioCyciCPNE115711:GI7B-292-MONOMER.
CPNE115713:GHEY-491-MONOMER.
CPNE138677:GH8N-484-MONOMER.
CPNE182082:GH4N-506-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CWL029.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AR39.
  3. "Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA."
    Shirai M., Hirakawa H., Kimoto M., Tabuchi M., Kishi F., Ouchi K., Shiba T., Ishii K., Hattori M., Kuhara S., Nakazawa T.
    Nucleic Acids Res. 28:2311-2314(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: J138.
  4. "The genome sequence of Chlamydia pneumoniae TW183 and comparison with other Chlamydia strains based on whole genome sequence analysis."
    Geng M.M., Schuhmacher A., Muehldorfer I., Bensch K.W., Schaefer K.P., Schneider S., Pohl T., Essig A., Marre R., Melchers K.
    Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TW-183.

Entry informationi

Entry nameiGLGB_CHLPN
AccessioniPrimary (citable) accession number: Q9Z876
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: May 1, 1999
Last modified: June 24, 2015
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.