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Protein

Flagellar protein

Gene

fliO

Organism
Vibrio parahaemolyticus
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Flagellar proteinUniRule annotation
Gene namesi
Name:fliOImported
ORF Names:ACS91_26495Imported, ACX05_25170Imported, HC02_21860Imported, WR32_20230Imported
OrganismiVibrio parahaemolyticusImported
Taxonomic identifieri670 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000033369 Componenti: Unassembled WGS sequence
  • UP000037097 Componenti: Unassembled WGS sequence
  • UP000037697 Componenti: Unassembled WGS sequence
  • UP000030589 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cell membrane UniRule annotation
  • Bacterial flagellum basal body UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei37 – 5620HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Bacterial flagellumUniRule annotation, Cell membraneUniRule annotation, Cell projection, Cilium, FlagellumImported, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727Sequence analysisAdd
BLAST
Chaini28 – 137110Flagellar proteinSequence analysisPRO_5007217132Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223926.VP2240.

Family & Domainsi

Sequence similaritiesi

Belongs to the FliO/MopB family.UniRule annotation

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiENOG41066FK. Bacteria.
COG3190. LUCA.
HOGENOMiHOG000253556.

Family and domain databases

InterProiIPR022781. Flagellar_biosynth_FliO.
[Graphical view]
PfamiPF04347. FliO. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03500. FliO_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9Z6F9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSSITKRLK QITGALGLML SAPYAFAAAP SNLDLATTLG SLVLVIGVIL
60 70 80 90 100
LLAWLLKRMQ VPALGQQKGL RIVSQLPVGT KERIAVVQVG EEQFLVGITS
110 120 130
QSIQTLAKLE KPLKEEELAT NAFASQFSQL IKKNDKG
Length:137
Mass (Da):14,714
Last modified:May 1, 1999 - v1
Checksum:iFE1B85E2785B38F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF069392 Genomic DNA. Translation: AAD15909.1.
JPIP01001125 Genomic DNA. Translation: KGT34111.1.
LASG01000050 Genomic DNA. Translation: KKC68047.1.
LFWN01000175 Genomic DNA. Translation: KOE80154.1.
LIRS01000149 Genomic DNA. Translation: KOY19766.1.
RefSeqiWP_005457659.1. NZ_LQGU01000005.1.

Genome annotation databases

EnsemblBacteriaiKGT34111; KGT34111; HC02_21860.
KKC68047; KKC68047; WR32_20230.
KLI83249; KLI83249; AAY62_20410.
KOC96938; KOC96938; ACS82_21225.
KOE01010; KOE01010; ACS81_16720.
KOE10176; KOE10176; ACS90_23530.
KOE12203; KOE12203; ACS85_10675.
KOE13658; KOE13658; ACS89_18580.
KOE80154; KOE80154; ACS91_26495.
KOE94564; KOE94564; ACS88_10760.
KOF17542; KOF17542; ACX13_25905.
KOF19352; KOF19352; ACX16_15505.
KOF37775; KOF37775; ACX04_01940.
KOF48679; KOF48679; ACX14_07180.
KOF50508; KOF50508; ACX07_04955.
KOH06184; KOH06184; ACZ98_15575.
KOH07081; KOH07081; ACZ89_17815.
KOH10801; KOH10801; ACZ96_11625.
KOH18299; KOH18299; ACZ92_19395.
KOH23318; KOH23318; ACZ88_05130.
KOH27600; KOH27600; ACZ97_16530.
KOH30530; KOH30530; ACZ93_12890.
KOH37367; KOH37367; ACZ94_07890.
KOH40747; KOH40747; ACZ95_04175.
KON52726; KON52726; ACX11_20720.
KON55913; KON55913; ACX01_04940.
KON57843; KON57843; ACX02_08695.
KOY19766; KOY19766; ACX05_25170.
PATRICi20142628. VBIVibPar50997_2143.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF069392 Genomic DNA. Translation: AAD15909.1.
JPIP01001125 Genomic DNA. Translation: KGT34111.1.
LASG01000050 Genomic DNA. Translation: KKC68047.1.
LFWN01000175 Genomic DNA. Translation: KOE80154.1.
LIRS01000149 Genomic DNA. Translation: KOY19766.1.
RefSeqiWP_005457659.1. NZ_LQGU01000005.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VP2240.

Protocols and materials databases

DNASUi1189753.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiKGT34111; KGT34111; HC02_21860.
KKC68047; KKC68047; WR32_20230.
KLI83249; KLI83249; AAY62_20410.
KOC96938; KOC96938; ACS82_21225.
KOE01010; KOE01010; ACS81_16720.
KOE10176; KOE10176; ACS90_23530.
KOE12203; KOE12203; ACS85_10675.
KOE13658; KOE13658; ACS89_18580.
KOE80154; KOE80154; ACS91_26495.
KOE94564; KOE94564; ACS88_10760.
KOF17542; KOF17542; ACX13_25905.
KOF19352; KOF19352; ACX16_15505.
KOF37775; KOF37775; ACX04_01940.
KOF48679; KOF48679; ACX14_07180.
KOF50508; KOF50508; ACX07_04955.
KOH06184; KOH06184; ACZ98_15575.
KOH07081; KOH07081; ACZ89_17815.
KOH10801; KOH10801; ACZ96_11625.
KOH18299; KOH18299; ACZ92_19395.
KOH23318; KOH23318; ACZ88_05130.
KOH27600; KOH27600; ACZ97_16530.
KOH30530; KOH30530; ACZ93_12890.
KOH37367; KOH37367; ACZ94_07890.
KOH40747; KOH40747; ACZ95_04175.
KON52726; KON52726; ACX11_20720.
KON55913; KON55913; ACX01_04940.
KON57843; KON57843; ACX02_08695.
KOY19766; KOY19766; ACX05_25170.
PATRICi20142628. VBIVibPar50997_2143.

Phylogenomic databases

eggNOGiENOG41066FK. Bacteria.
COG3190. LUCA.
HOGENOMiHOG000253556.

Family and domain databases

InterProiIPR022781. Flagellar_biosynth_FliO.
[Graphical view]
PfamiPF04347. FliO. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03500. FliO_TIGR. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Insertional inactivation of genes encoding components of the sodium-type flagellar motor and switch of Vibrio parahaemolyticus."
    Boles B.R., McCarter L.L.
    J. Bacteriol. 182:1035-1045(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BB22Imported.
  2. "Components of the polar flagellar switch complex and assembly apparatus."
    Jaques S., Kim Y.K., McCarter L.L.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BB22Imported.
  3. "Genome sequence of Vibrio parahaemolyticus isolated from the disease outbreak among cultured Litopenaeus vannamei (Pacific white shrimp) in India."
    Kumar B.K., Deekshit V.K., Juliet R.M., Rai P., Madhushankara M., Karunasagar I., Karunasagar I.
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VPA-67Imported.
  4. "Vibrio parahaemolyticus Canadian Clinical Isolates."
    Ronholm J., Petronella N., Kenwell R., Banerjee S.
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 07-1339Imported.
  5. "Foodborne Vibrio parahaemolyticus Isolates."
    Ronholm J., Petronella N., Kenwell R., Banerjee S.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S456-5Imported.
  6. "Foodborne Vibrio parahaemolyticus Isolates."
    Ronholm J., Petronella N., Kenwell R., Banerjee S.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HS-06-05Imported.

Entry informationi

Entry nameiQ9Z6F9_VIBPH
AccessioniPrimary (citable) accession number: Q9Z6F9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: May 11, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.