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Q9Z2Q5

- RM40_MOUSE

UniProt

Q9Z2Q5 - RM40_MOUSE

Protein

39S ribosomal protein L40, mitochondrial

Gene

Mrpl40

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 89 (01 Oct 2014)
      Sequence version 2 (27 May 2002)
      Previous versions | rss
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    Functioni

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    39S ribosomal protein L40, mitochondrial
    Short name:
    L40mt
    Short name:
    MRP-L40
    Alternative name(s):
    Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog
    Gene namesi
    Name:Mrpl40
    Synonyms:Nlvcf
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 16

    Organism-specific databases

    MGIiMGI:1332635. Mrpl40.

    Subcellular locationi

    Mitochondrion By similarity

    GO - Cellular componenti

    1. mitochondrial ribosome Source: UniProtKB
    2. mitochondrion Source: MGI

    Keywords - Cellular componenti

    Mitochondrion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 4646MitochondrionBy similarityAdd
    BLAST
    Chaini47 – 20616039S ribosomal protein L40, mitochondrialPRO_0000030559Add
    BLAST

    Proteomic databases

    MaxQBiQ9Z2Q5.
    PaxDbiQ9Z2Q5.
    PRIDEiQ9Z2Q5.

    PTM databases

    PhosphoSiteiQ9Z2Q5.

    Expressioni

    Tissue specificityi

    Ubiquitous.1 Publication

    Gene expression databases

    ArrayExpressiQ9Z2Q5.
    BgeeiQ9Z2Q5.
    CleanExiMM_MRPL40.
    GenevestigatoriQ9Z2Q5.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9Z2Q5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiNOG331446.
    GeneTreeiENSGT00390000010239.
    HOGENOMiHOG000015976.
    HOVERGENiHBG044505.
    InParanoidiQ9Z2Q5.
    KOiK17421.
    OMAiLYKQQEH.
    OrthoDBiEOG71VSVJ.
    PhylomeDBiQ9Z2Q5.
    TreeFamiTF105982.

    Family and domain databases

    InterProiIPR019192. Ribosomal_L28/L40_mit.
    [Graphical view]
    PfamiPF09812. MRP-L28. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9Z2Q5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATGVMLCAA RALRPRSWIP GTCQAHVRHT HQRASLLAFW DLIPMRAEPL    50
    RKKKKVDPRK DQAAKDRLKK RIRKLEKASQ ELIPIEDFIT PVRFLDKSRQ 100
    RPQEEHSPEE SERRALLLKR WALFKQQEHE MERDAIRSML EAQQEALEEL 150
    KLESAELYAE AIKRDTSLFP FEKEGPHYTP PISNYQAPEG RYNDITKVYT 200
    QVEFKR 206
    Length:206
    Mass (Da):24,301
    Last modified:May 27, 2002 - v2
    Checksum:i9AF9D8095D7B28D2
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti200 – 2001T → K.1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF034092 mRNA. Translation: AAC70905.1.
    BC028436 mRNA. Translation: AAH28436.1.
    AK018757 mRNA. Translation: BAB31389.1.
    CCDSiCCDS28030.1.
    RefSeqiNP_035052.2. NM_010922.2.
    UniGeneiMm.20918.

    Genome annotation databases

    EnsembliENSMUST00000023391; ENSMUSP00000023391; ENSMUSG00000022706.
    GeneIDi18100.
    KEGGimmu:18100.
    UCSCiuc007yop.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF034092 mRNA. Translation: AAC70905.1 .
    BC028436 mRNA. Translation: AAH28436.1 .
    AK018757 mRNA. Translation: BAB31389.1 .
    CCDSi CCDS28030.1.
    RefSeqi NP_035052.2. NM_010922.2.
    UniGenei Mm.20918.

    3D structure databases

    ProteinModelPortali Q9Z2Q5.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q9Z2Q5.

    Proteomic databases

    MaxQBi Q9Z2Q5.
    PaxDbi Q9Z2Q5.
    PRIDEi Q9Z2Q5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000023391 ; ENSMUSP00000023391 ; ENSMUSG00000022706 .
    GeneIDi 18100.
    KEGGi mmu:18100.
    UCSCi uc007yop.2. mouse.

    Organism-specific databases

    CTDi 64976.
    MGIi MGI:1332635. Mrpl40.

    Phylogenomic databases

    eggNOGi NOG331446.
    GeneTreei ENSGT00390000010239.
    HOGENOMi HOG000015976.
    HOVERGENi HBG044505.
    InParanoidi Q9Z2Q5.
    KOi K17421.
    OMAi LYKQQEH.
    OrthoDBi EOG71VSVJ.
    PhylomeDBi Q9Z2Q5.
    TreeFami TF105982.

    Miscellaneous databases

    NextBioi 293263.
    PROi Q9Z2Q5.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q9Z2Q5.
    Bgeei Q9Z2Q5.
    CleanExi MM_MRPL40.
    Genevestigatori Q9Z2Q5.

    Family and domain databases

    InterProi IPR019192. Ribosomal_L28/L40_mit.
    [Graphical view ]
    Pfami PF09812. MRP-L28. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Isolation and characterization of a human gene containing a nuclear localization signal from the critical region for velo-cardio-facial syndrome on 22q11."
      Funke B., Puech A., Saint-Jore B., Pandita R., Skoultchi A., Morrow B.
      Genomics 53:146-154(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, VARIANT LYS-200.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Mammary gland.
    3. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 41-206.
      Strain: C57BL/6J.
      Tissue: Embryo.

    Entry informationi

    Entry nameiRM40_MOUSE
    AccessioniPrimary (citable) accession number: Q9Z2Q5
    Secondary accession number(s): Q9CS52
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 27, 2002
    Last sequence update: May 27, 2002
    Last modified: October 1, 2014
    This is version 89 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

    External Data

    Dasty 3