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Q9Z2Q5 (RM40_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
39S ribosomal protein L40, mitochondrial

Short name=L40mt
Short name=MRP-L40
Alternative name(s):
Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog
Gene names
Name:Mrpl40
Synonyms:Nlvcf
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Mitochondrion By similarity.

Tissue specificity

Ubiquitous. Ref.1

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 4646Mitochondrion By similarity
Chain47 – 20616039S ribosomal protein L40, mitochondrial
PRO_0000030559

Natural variations

Natural variant2001T → K. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q9Z2Q5 [UniParc].

Last modified May 27, 2002. Version 2.
Checksum: 9AF9D8095D7B28D2

FASTA20624,301
        10         20         30         40         50         60 
MATGVMLCAA RALRPRSWIP GTCQAHVRHT HQRASLLAFW DLIPMRAEPL RKKKKVDPRK 

        70         80         90        100        110        120 
DQAAKDRLKK RIRKLEKASQ ELIPIEDFIT PVRFLDKSRQ RPQEEHSPEE SERRALLLKR 

       130        140        150        160        170        180 
WALFKQQEHE MERDAIRSML EAQQEALEEL KLESAELYAE AIKRDTSLFP FEKEGPHYTP 

       190        200 
PISNYQAPEG RYNDITKVYT QVEFKR 

« Hide

References

« Hide 'large scale' references
[1]"Isolation and characterization of a human gene containing a nuclear localization signal from the critical region for velo-cardio-facial syndrome on 22q11."
Funke B., Puech A., Saint-Jore B., Pandita R., Skoultchi A., Morrow B.
Genomics 53:146-154(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, VARIANT LYS-200.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Mammary gland.
[3]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 41-206.
Strain: C57BL/6J.
Tissue: Embryo.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF034092 mRNA. Translation: AAC70905.1.
BC028436 mRNA. Translation: AAH28436.1.
AK018757 mRNA. Translation: BAB31389.1.
RefSeqNP_035052.2. NM_010922.2.
UniGeneMm.20918.

3D structure databases

ProteinModelPortalQ9Z2Q5.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteQ9Z2Q5.

Proteomic databases

PaxDbQ9Z2Q5.
PRIDEQ9Z2Q5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000023391; ENSMUSP00000023391; ENSMUSG00000022706.
GeneID18100.
KEGGmmu:18100.
UCSCuc007yop.2. mouse.

Organism-specific databases

CTD64976.
MGIMGI:1332635. Mrpl40.

Phylogenomic databases

eggNOGNOG331446.
GeneTreeENSGT00390000010239.
HOGENOMHOG000015976.
HOVERGENHBG044505.
InParanoidQ9Z2Q5.
KOK17421.
OMAKWSLYKQ.
OrthoDBEOG71VSVJ.
PhylomeDBQ9Z2Q5.
TreeFamTF105982.

Gene expression databases

ArrayExpressQ9Z2Q5.
BgeeQ9Z2Q5.
CleanExMM_MRPL40.
GenevestigatorQ9Z2Q5.

Family and domain databases

InterProIPR019192. Ribosomal_L28/L40_mit.
[Graphical view]
PfamPF09812. MRP-L28. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio293263.
PROQ9Z2Q5.
SOURCESearch...

Entry information

Entry nameRM40_MOUSE
AccessionPrimary (citable) accession number: Q9Z2Q5
Secondary accession number(s): Q9CS52
Entry history
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: May 27, 2002
Last modified: April 16, 2014
This is version 86 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot