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Q9Z2Q5

- RM40_MOUSE

UniProt

Q9Z2Q5 - RM40_MOUSE

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Protein

39S ribosomal protein L40, mitochondrial

Gene

Mrpl40

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_270125. Mitochondrial translation elongation.
REACT_270158. Mitochondrial translation termination.
REACT_271096. Mitochondrial translation initiation.

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L40, mitochondrial
Short name:
L40mt
Short name:
MRP-L40
Alternative name(s):
Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog
Gene namesi
Name:Mrpl40
Synonyms:Nlvcf
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 16

Organism-specific databases

MGIiMGI:1332635. Mrpl40.

Subcellular locationi

Mitochondrion By similarity

GO - Cellular componenti

  1. mitochondrial ribosome Source: UniProtKB
  2. mitochondrion Source: MGI
  3. nucleolus Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4646MitochondrionBy similarityAdd
BLAST
Chaini47 – 20616039S ribosomal protein L40, mitochondrialPRO_0000030559Add
BLAST

Proteomic databases

MaxQBiQ9Z2Q5.
PaxDbiQ9Z2Q5.
PRIDEiQ9Z2Q5.

PTM databases

PhosphoSiteiQ9Z2Q5.

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

BgeeiQ9Z2Q5.
CleanExiMM_MRPL40.
ExpressionAtlasiQ9Z2Q5. baseline and differential.
GenevestigatoriQ9Z2Q5.

Structurei

3D structure databases

ProteinModelPortaliQ9Z2Q5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiNOG331446.
GeneTreeiENSGT00390000010239.
HOGENOMiHOG000015976.
HOVERGENiHBG044505.
InParanoidiQ9Z2Q5.
KOiK17421.
OMAiLYKQQEH.
OrthoDBiEOG71VSVJ.
PhylomeDBiQ9Z2Q5.
TreeFamiTF105982.

Family and domain databases

InterProiIPR019192. Ribosomal_L28/L40_mit.
[Graphical view]
PfamiPF09812. MRP-L28. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9Z2Q5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATGVMLCAA RALRPRSWIP GTCQAHVRHT HQRASLLAFW DLIPMRAEPL
60 70 80 90 100
RKKKKVDPRK DQAAKDRLKK RIRKLEKASQ ELIPIEDFIT PVRFLDKSRQ
110 120 130 140 150
RPQEEHSPEE SERRALLLKR WALFKQQEHE MERDAIRSML EAQQEALEEL
160 170 180 190 200
KLESAELYAE AIKRDTSLFP FEKEGPHYTP PISNYQAPEG RYNDITKVYT

QVEFKR
Length:206
Mass (Da):24,301
Last modified:May 27, 2002 - v2
Checksum:i9AF9D8095D7B28D2
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti200 – 2001T → K.1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF034092 mRNA. Translation: AAC70905.1.
BC028436 mRNA. Translation: AAH28436.1.
AK018757 mRNA. Translation: BAB31389.1.
CCDSiCCDS28030.1.
RefSeqiNP_035052.2. NM_010922.2.
UniGeneiMm.20918.

Genome annotation databases

EnsembliENSMUST00000023391; ENSMUSP00000023391; ENSMUSG00000022706.
GeneIDi18100.
KEGGimmu:18100.
UCSCiuc007yop.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF034092 mRNA. Translation: AAC70905.1 .
BC028436 mRNA. Translation: AAH28436.1 .
AK018757 mRNA. Translation: BAB31389.1 .
CCDSi CCDS28030.1.
RefSeqi NP_035052.2. NM_010922.2.
UniGenei Mm.20918.

3D structure databases

ProteinModelPortali Q9Z2Q5.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q9Z2Q5.

Proteomic databases

MaxQBi Q9Z2Q5.
PaxDbi Q9Z2Q5.
PRIDEi Q9Z2Q5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000023391 ; ENSMUSP00000023391 ; ENSMUSG00000022706 .
GeneIDi 18100.
KEGGi mmu:18100.
UCSCi uc007yop.2. mouse.

Organism-specific databases

CTDi 64976.
MGIi MGI:1332635. Mrpl40.

Phylogenomic databases

eggNOGi NOG331446.
GeneTreei ENSGT00390000010239.
HOGENOMi HOG000015976.
HOVERGENi HBG044505.
InParanoidi Q9Z2Q5.
KOi K17421.
OMAi LYKQQEH.
OrthoDBi EOG71VSVJ.
PhylomeDBi Q9Z2Q5.
TreeFami TF105982.

Enzyme and pathway databases

Reactomei REACT_270125. Mitochondrial translation elongation.
REACT_270158. Mitochondrial translation termination.
REACT_271096. Mitochondrial translation initiation.

Miscellaneous databases

NextBioi 293263.
PROi Q9Z2Q5.
SOURCEi Search...

Gene expression databases

Bgeei Q9Z2Q5.
CleanExi MM_MRPL40.
ExpressionAtlasi Q9Z2Q5. baseline and differential.
Genevestigatori Q9Z2Q5.

Family and domain databases

InterProi IPR019192. Ribosomal_L28/L40_mit.
[Graphical view ]
Pfami PF09812. MRP-L28. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation and characterization of a human gene containing a nuclear localization signal from the critical region for velo-cardio-facial syndrome on 22q11."
    Funke B., Puech A., Saint-Jore B., Pandita R., Skoultchi A., Morrow B.
    Genomics 53:146-154(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, VARIANT LYS-200.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Mammary gland.
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 41-206.
    Strain: C57BL/6J.
    Tissue: Embryo.

Entry informationi

Entry nameiRM40_MOUSE
AccessioniPrimary (citable) accession number: Q9Z2Q5
Secondary accession number(s): Q9CS52
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 27, 2002
Last sequence update: May 27, 2002
Last modified: November 26, 2014
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3