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Q9Z2A1

- Q9Z2A1_RAT

UniProt

Q9Z2A1 - Q9Z2A1_RAT

Protein
Submitted name:

Patched

Gene

Ptch1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (01 May 1999)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. hedgehog receptor activity Source: InterPro

    GO - Biological processi

    1. response to drug Source: RGD
    2. response to estradiol Source: RGD
    3. response to mechanical stimulus Source: RGD
    4. response to organic cyclic compound Source: RGD
    5. response to retinoic acid Source: RGD

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    PatchedImported
    Gene namesi
    Name:Ptch1Imported
    Synonyms:ptcImported, PtchImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi621425. Ptch1.

    Subcellular locationi

    GO - Cellular componenti

    1. axonal growth cone Source: RGD
    2. dendritic growth cone Source: RGD
    3. integral component of membrane Source: InterPro
    4. postsynaptic density Source: RGD

    Expressioni

    Gene expression databases

    GenevestigatoriQ9Z2A1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9Z2A1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG003801.
    InParanoidiQ9Z2A1.
    PhylomeDBiQ9Z2A1.

    Family and domain databases

    InterProiIPR000731. SSD.
    IPR004766. TM_rcpt_patched.
    [Graphical view]
    TIGRFAMsiTIGR00918. 2A060602. 1 hit.
    PROSITEiPS50156. SSD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q9Z2A1-1 [UniParc]FASTAAdd to Basket

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    MASAGNAAGA LGRQAGGGRR RRTGGPHRAA PDRDYLHRPS YCDAAFAMEQ    50
    ISKGKATGRK APLWLRAKFQ RLLFKLGCYI QKDCGKFLVV GLLIFGAFAV 100
    GLKAANLETN VEELWVEVGG RVSRELNYTR QKIGEEAMFN PQLMIQTPKE 150
    EGANVLTTEA LLQHLDSALQ ASRVHVYMYN RQWKLEHLCY KSGELITETG 200
    YMDQIIEYLY PCLIITPLDC FWEGAKLQSG TAYLLGKPPL RWTNFDPLEF 250
    LEELKKINYQ VDSWEEMLNK AEVGHGYMDR PCLNPADPDC PATAPNKNST 300
    KPLDVALVLN GGCQGLSRKY MHWQEELIVG GTVKNATGKL VSAHALQTMF 350
    QLMTPKQMYE HFRGYDYVSH INWNEDRAAA ILEAWQRTYV EVVHQSVAPN 400
    STQKVLSFTT RTLDDILKSF SDVSVIRVAS GYLLMLAYAC LTMLRWDCSK 450
    SQGAVGLAGV LLVALSVAAG LGLCSLIGIS FNAATTQVLP FLALGVGVDD 500
    VFLLAHAFSE TGQNKRIPIE DRTGECLKRT GASVALTSIS NVTAFFMAAL 550
    IPIPALRAFS LQAAVVVVFN FAMVLLIFPA ILSMDLYRRE DRRLDIFCCF 600
    TSPCVSLV 608
    Length:608
    Mass (Da):67,328
    Last modified:May 1, 1999 - v1
    Checksum:i73F505A1512EE9C5
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei608 – 6081Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF079162 mRNA. Translation: AAC99398.1.
    UniGeneiRn.102312.

    Genome annotation databases

    UCSCiRGD:621425. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF079162 mRNA. Translation: AAC99398.1 .
    UniGenei Rn.102312.

    3D structure databases

    ProteinModelPortali Q9Z2A1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:621425. rat.

    Organism-specific databases

    RGDi 621425. Ptch1.

    Phylogenomic databases

    HOVERGENi HBG003801.
    InParanoidi Q9Z2A1.
    PhylomeDBi Q9Z2A1.

    Gene expression databases

    Genevestigatori Q9Z2A1.

    Family and domain databases

    InterProi IPR000731. SSD.
    IPR004766. TM_rcpt_patched.
    [Graphical view ]
    TIGRFAMsi TIGR00918. 2A060602. 1 hit.
    PROSITEi PS50156. SSD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Partial cDNA sequence of rat ptc gene."
      Zhao P., Roy N.K., Xu G., Burns F.J.
      Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Sprague DawleyImported.
      Tissue: HypothalamusImported.

    Entry informationi

    Entry nameiQ9Z2A1_RAT
    AccessioniPrimary (citable) accession number: Q9Z2A1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 1999
    Last sequence update: May 1, 1999
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)