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Protein
Submitted name:

Stretch-inhibitable nonselective channel (SIC)

Gene

Trpv1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • cation channel activity Source: MGI

GO - Biological processi

  • cation transport Source: MGI
Complete GO annotation...

Protein family/group databases

TCDBi1.A.4.2.2. the transient receptor potential ca(2+) channel (trp-cc) family.

Names & Taxonomyi

Protein namesi
Submitted name:
Stretch-inhibitable nonselective channel (SIC)Imported
Gene namesi
Name:Trpv1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi628841. Trpv1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei126 – 14520HelicalSequence analysisAdd
BLAST
Transmembranei165 – 18319HelicalSequence analysisAdd
BLAST
Transmembranei204 – 22421HelicalSequence analysisAdd
BLAST
Transmembranei230 – 24920HelicalSequence analysisAdd
BLAST
Transmembranei270 – 29223HelicalSequence analysisAdd
BLAST
Transmembranei350 – 37425HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • membrane Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

ProteinModelPortaliQ9Z182.
SMRiQ9Z182. Positions 1-52.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini127 – 385259Ion_transInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOVERGENiHBG054085.

Family and domain databases

InterProiIPR005821. Ion_trans_dom.
IPR004729. TRP_channel.
IPR008347. TRPV1-4_channel.
[Graphical view]
PfamiPF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSiPR01768. TRPVRECEPTOR.
TIGRFAMsiTIGR00870. trp. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9Z182-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYNEILILGA KLHPTLKLEE ITNRKGLTPL ALAASSGKIG VLAYILQREI
60 70 80 90 100
HEPECRHLSR KFTEWAYGAV HSSLYDLSCI DTCEKNSVLE VIAYSSSETP
110 120 130 140 150
NRHDMLLVEP LNRLLQDKWD RFVKRIFYFN FFVYCLYMII FTAAAYYRPV
160 170 180 190 200
EGLPPYKLKN TVGDYFRVTG EILSVSGGVY FFFRGIQYFL QRRPSLKSLF
210 220 230 240 250
VDSYSEILFF VQSLFMLVSV VLYFSQRKEY VASMVFSLAM GWTNMLYYTR
260 270 280 290 300
GFQQMGIYAV MIEKMILRDL CRFMFVYLVF LFGFSTAVVT LIEDGKNNSL
310 320 330 340 350
PMESTPHKCR GSACKPGNSY NSLYSTCLEL FKFTIGMGDL EFTENYDFKA
360 370 380 390 400
VFIILLLAYV ILTYILLLNM LIALMGETVG QVSKESKHIW KLQWATTILD
410 420 430 440 450
IERSFPVFLR KAFRSGEMVT VGKSSDGTPD RRWCFRVDEV NWSHWNQNLG
460 470 480 490 500
IINEDPGKSE IYQYYGFSHT MGRLRRDRWS SVVPRVVELN KNSDTDEVVV
510 520
PLDNLGNPNC DGHQQGYAPK WRAEDAPL
Length:528
Mass (Da):61,018
Last modified:November 1, 1999 - v2
Checksum:i93E4B00A6A231FD0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015231 mRNA. Translation: BAA34942.2.
UniGeneiRn.3073.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015231 mRNA. Translation: BAA34942.2.
UniGeneiRn.3073.

3D structure databases

ProteinModelPortaliQ9Z182.
SMRiQ9Z182. Positions 1-52.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

TCDBi1.A.4.2.2. the transient receptor potential ca(2+) channel (trp-cc) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi628841. Trpv1.

Phylogenomic databases

HOVERGENiHBG054085.

Family and domain databases

InterProiIPR005821. Ion_trans_dom.
IPR004729. TRP_channel.
IPR008347. TRPV1-4_channel.
[Graphical view]
PfamiPF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSiPR01768. TRPVRECEPTOR.
TIGRFAMsiTIGR00870. trp. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ9Z182_RAT
AccessioniPrimary (citable) accession number: Q9Z182
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: November 1, 1999
Last modified: September 7, 2016
This is version 95 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.