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Protein
Submitted name:

Sodium/calcium exchanger 1 splice variant NaCa10

Gene

Slc8a1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. cell communication Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Sodium/calcium exchanger 1 splice variant NaCa10Imported
Gene namesi
Name:Slc8a1Imported
Synonyms:NCX1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi3717. Slc8a1.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9Z0T8.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040751.

Family & Domainsi

Family and domain databases

InterProiIPR003644. Calx_beta.
[Graphical view]
PfamiPF03160. Calx-beta. 2 hits.
[Graphical view]
SMARTiSM00237. Calx_beta. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q9Z0T8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
FTEGTVIFKP GETQKEIRVG IIDDDIFEED ENFLVHLSNV RVSSEVSEDG
60 70 80 90 100
ILDSNHVSAI ACLGSPNTAT ITIFDDDHAG IFTFEEPVTH VSESIGIMEV
110 120 130 140 150
KVLRTSGARG NVIIPYKTIE GTARGGGEDF EDTCGELEFQ NDEIVKIITI
160 170 180 190 200
RIFDREEYEK ECSFSLVLEE PKWIRRGMKG GFTLTGKYLY GQPVFRKVHA
210
RDHPIPSTVI SISEE
Length:215
Mass (Da):24,017
Last modified:May 1, 1999 - v1
Checksum:i6DF33E383F975E32
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei215 – 2151Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF115506 mRNA. Translation: AAD17214.1.
UniGeneiRn.118972.
Rn.935.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF115506 mRNA. Translation: AAD17214.1.
UniGeneiRn.118972.
Rn.935.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040751.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

RGDi3717. Slc8a1.

Gene expression databases

GenevestigatoriQ9Z0T8.

Family and domain databases

InterProiIPR003644. Calx_beta.
[Graphical view]
PfamiPF03160. Calx-beta. 2 hits.
[Graphical view]
SMARTiSM00237. Calx_beta. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Na+/Ca2+ exchanger isoforms of rat odontoblasts and osteoblasts."
    Lundquist P., Lundgren T., Gritli-Linde A., Linde A.
    Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9Z0T8_RAT
AccessioniPrimary (citable) accession number: Q9Z0T8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1999
Last sequence update: May 1, 1999
Last modified: October 29, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.