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Q9Z0D9

- CX3C1_MOUSE

UniProt

Q9Z0D9 - CX3C1_MOUSE

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Protein
CX3C chemokine receptor 1
Gene
Cx3cr1
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Receptor for the CX3C chemokine fractalkine and mediates both its adhesive and migratory functions.

GO - Molecular functioni

  1. C-X3-C chemokine receptor activity Source: Ensembl
  2. cytokine receptor activity Source: MGI

GO - Biological processi

  1. cell adhesion Source: InterPro
  2. cellular response to lipopolysaccharide Source: Ensembl
  3. cellular response to transforming growth factor beta stimulus Source: Ensembl
  4. cerebral cortex cell migration Source: MGI
  5. cytokine-mediated signaling pathway Source: MGI
  6. macrophage chemotaxis Source: MGI
  7. microglial cell activation involved in immune response Source: MGI
  8. negative regulation of angiogenesis Source: MGI
  9. negative regulation of cell migration Source: Ensembl
  10. negative regulation of extrinsic apoptotic signaling pathway in absence of ligand Source: MGI
  11. positive regulation of angiogenesis Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Recommended name:
CX3C chemokine receptor 1
Short name:
C-X3-C CKR-1
Short name:
CX3CR1
Alternative name(s):
Fractalkine receptor
Gene namesi
Name:Cx3cr1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:1333815. Cx3cr1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3232Extracellular Reviewed prediction
Add
BLAST
Transmembranei33 – 6028Helical; Name=1; Reviewed prediction
Add
BLAST
Topological domaini61 – 7010Cytoplasmic Reviewed prediction
Transmembranei71 – 9121Helical; Name=2; Reviewed prediction
Add
BLAST
Topological domaini92 – 10413Extracellular Reviewed prediction
Add
BLAST
Transmembranei105 – 12622Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini127 – 14317Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei144 – 16825Helical; Name=4; Reviewed prediction
Add
BLAST
Topological domaini169 – 19628Extracellular Reviewed prediction
Add
BLAST
Transmembranei197 – 21620Helical; Name=5; Reviewed prediction
Add
BLAST
Topological domaini217 – 23216Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei233 – 25725Helical; Name=6; Reviewed prediction
Add
BLAST
Topological domaini258 – 27417Extracellular Reviewed prediction
Add
BLAST
Transmembranei275 – 29824Helical; Name=7; Reviewed prediction
Add
BLAST
Topological domaini299 – 35456Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. neuron projection Source: Ensembl
  3. neuronal cell body membrane Source: Ensembl
  4. perinuclear region of cytoplasm Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 354354CX3C chemokine receptor 1
PRO_0000069327Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi103 ↔ 176 By similarity

Post-translational modificationi

This protein is not N-glycosylated which is unusual for G-protein-coupled receptors.

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiQ9Z0D9.
PRIDEiQ9Z0D9.

PTM databases

PhosphoSiteiQ9Z0D9.

Expressioni

Gene expression databases

ArrayExpressiQ9Z0D9.
BgeeiQ9Z0D9.
CleanExiMM_CX3CR1.
GenevestigatoriQ9Z0D9.

Structurei

3D structure databases

ProteinModelPortaliQ9Z0D9.
SMRiQ9Z0D9. Positions 34-305.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG151350.
GeneTreeiENSGT00700000104407.
HOGENOMiHOG000234122.
HOVERGENiHBG106917.
InParanoidiQ9Z0D9.
KOiK04192.
OMAiTMTETIL.
OrthoDBiEOG7327P9.
PhylomeDBiQ9Z0D9.
TreeFamiTF330966.

Family and domain databases

Gene3Di1.20.1070.10. 1 hit.
InterProiIPR005387. Chemokine_CX3CR1.
IPR000355. Chemokine_rcpt.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PANTHERiPTHR24227. PTHR24227. 1 hit.
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR01562. FRACTALKINER.
PR00237. GPCRRHODOPSN.
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9Z0D9-1 [UniParc]FASTAAdd to Basket

« Hide

MSTSFPELDL ENFEYDDSAE ACYLGDIVAF GTIFLSVFYA LVFTFGLVGN    50
LLVVLALTNS RKPKSITDIY LLNLALSDLL FVATLPFWTH YLISHEGLHN 100
AMCKLTTAFF FIGFFGGIFF ITVISIDRYL AIVLAANSMN NRTVQHGVTI 150
SLGVWAAAIL VASPQFMFTK RKDNECLGDY PEVLQEMWPV LRNSEVNILG 200
FALPLLIMSF CYFRIIQTLF SCKNRKKARA VRLILLVVFA FFLFWTPYNI 250
MIFLETLKFY NFFPSCDMKR DLRLALSVTE TVAFSHCCLN PFIYAFAGEK 300
FRRYLGHLYR KCLAVLCGHP VHTGFSPESQ RSRQDSILSS FTHYTSEGDG 350
SLLL 354
Length:354
Mass (Da):40,266
Last modified:May 1, 1999 - v1
Checksum:i12C745E8E3755CA9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF074912 Genomic DNA. Translation: AAD08665.1.
AF102269 mRNA. Translation: AAC72408.1.
BC012653 mRNA. Translation: AAH12653.1.
CCDSiCCDS40806.1.
RefSeqiNP_034117.3. NM_009987.4.
UniGeneiMm.44065.

Genome annotation databases

EnsembliENSMUST00000064165; ENSMUSP00000063986; ENSMUSG00000052336.
ENSMUST00000177637; ENSMUSP00000136413; ENSMUSG00000052336.
GeneIDi13051.
KEGGimmu:13051.
UCSCiuc009sbz.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF074912 Genomic DNA. Translation: AAD08665.1 .
AF102269 mRNA. Translation: AAC72408.1 .
BC012653 mRNA. Translation: AAH12653.1 .
CCDSi CCDS40806.1.
RefSeqi NP_034117.3. NM_009987.4.
UniGenei Mm.44065.

3D structure databases

ProteinModelPortali Q9Z0D9.
SMRi Q9Z0D9. Positions 34-305.
ModBasei Search...
MobiDBi Search...

Chemistry

GuidetoPHARMACOLOGYi 74.

Protein family/group databases

GPCRDBi Search...

PTM databases

PhosphoSitei Q9Z0D9.

Proteomic databases

PaxDbi Q9Z0D9.
PRIDEi Q9Z0D9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000064165 ; ENSMUSP00000063986 ; ENSMUSG00000052336 .
ENSMUST00000177637 ; ENSMUSP00000136413 ; ENSMUSG00000052336 .
GeneIDi 13051.
KEGGi mmu:13051.
UCSCi uc009sbz.1. mouse.

Organism-specific databases

CTDi 1524.
MGIi MGI:1333815. Cx3cr1.

Phylogenomic databases

eggNOGi NOG151350.
GeneTreei ENSGT00700000104407.
HOGENOMi HOG000234122.
HOVERGENi HBG106917.
InParanoidi Q9Z0D9.
KOi K04192.
OMAi TMTETIL.
OrthoDBi EOG7327P9.
PhylomeDBi Q9Z0D9.
TreeFami TF330966.

Miscellaneous databases

NextBioi 282966.
PROi Q9Z0D9.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9Z0D9.
Bgeei Q9Z0D9.
CleanExi MM_CX3CR1.
Genevestigatori Q9Z0D9.

Family and domain databases

Gene3Di 1.20.1070.10. 1 hit.
InterProi IPR005387. Chemokine_CX3CR1.
IPR000355. Chemokine_rcpt.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view ]
PANTHERi PTHR24227. PTHR24227. 1 hit.
Pfami PF00001. 7tm_1. 1 hit.
[Graphical view ]
PRINTSi PR01562. FRACTALKINER.
PR00237. GPCRRHODOPSN.
PROSITEi PS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Gene cloning, RNA distribution, and functional expression of mCX3CR1, a mouse chemotactic receptor for the CX3C chemokine fractalkine."
    Combadiere C., Gao J.-L., Tiffany H.L., Murphy P.M.
    Biochem. Biophys. Res. Commun. 253:728-732(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 129/Sv.
  2. "Cloning and characterization of murine CX3CR1, a receptor for murine fractalkine/neurotactin."
    Coultas L., McColl S.R.
    Submitted (OCT-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: 129/SvJ.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Czech II.
    Tissue: Mammary gland.

Entry informationi

Entry nameiCX3C1_MOUSE
AccessioniPrimary (citable) accession number: Q9Z0D9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: July 9, 2014
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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