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Protein
Submitted name:

Gp41

Gene

env

Organism
Human immunodeficiency virus 1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Gp41Imported
Gene namesi
Name:envImported
OrganismiHuman immunodeficiency virus 1Imported
Taxonomic identifieri11676 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

GO - Cellular componenti

  1. viral envelope Source: InterPro
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HLRX-ray1.57A7-39[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

InterProiIPR000328. Retroviral_envelope_protein.
[Graphical view]
PfamiPF00517. GP41. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q9YYZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
NLLRAIEAQQ HLLQLTVWGI KQLQARILAV ERYLKDQQLL GIWGCSGKHI
60 70 80 90 100
CTTNVPWNSS WSNKSIXEIW NNMTWMEWER EIDNYTXIIY XLIEESQIQQ
110 120
DKNEQELLQL DNWASLWNWF SITNWLWYI
Length:129
Mass (Da):15,615
Last modified:April 30, 1999 - v1
Checksum:i9CA6068B58F42ADF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei129 – 1291Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF006896 Genomic RNA. Translation: AAD01340.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF006896 Genomic RNA. Translation: AAD01340.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HLRX-ray1.57A7-39[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR000328. Retroviral_envelope_protein.
[Graphical view]
PfamiPF00517. GP41. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Serologic and Phylogenetic Characterization of HIV-1 Subtypes in Uganda."
    Brennan C.A., Lund J.K., Golden A., Yamaguchi J., Vallari A.S., Phillips J.F., Kataaha P.K., Jackson J.B., Devare S.G.
    Submitted (MAY-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 205.586Imported.
  2. "Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein."
    Liu J., Li Q., Dey A.K., Moore J.P., Lu M.
    Submitted (SEP-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.57 ANGSTROMS) OF 7-39.

Entry informationi

Entry nameiQ9YYZ1_9HIV1
AccessioniPrimary (citable) accession number: Q9YYZ1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 30, 1999
Last sequence update: April 30, 1999
Last modified: January 6, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.