##gff-version 3 Q9YLJ1 UniProtKB Initiator methionine 1 1 . . . Note=Removed%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Chain 2 2196 . . . ID=PRO_0000426371;Note=Genome polyprotein Q9YLJ1 UniProtKB Chain 2 862 . . . ID=PRO_0000426372;Note=P1 Q9YLJ1 UniProtKB Chain 2 331 . . . ID=PRO_0000426373;Note=Capsid protein VP0 Q9YLJ1 UniProtKB Chain 2 69 . . . ID=PRO_0000426374;Note=Capsid protein VP4 Q9YLJ1 UniProtKB Chain 70 331 . . . ID=PRO_0000426375;Note=Capsid protein VP2 Q9YLJ1 UniProtKB Chain 332 570 . . . ID=PRO_0000426376;Note=Capsid protein VP3 Q9YLJ1 UniProtKB Chain 571 862 . . . ID=PRO_0000426377;Note=Capsid protein VP1 Q9YLJ1 UniProtKB Chain 863 1440 . . . ID=PRO_0000426378;Note=P2 Q9YLJ1 UniProtKB Chain 863 1012 . . . ID=PRO_0000426379;Note=Protease 2A Q9YLJ1 UniProtKB Chain 1013 1111 . . . ID=PRO_0000039664;Note=Protein 2B Q9YLJ1 UniProtKB Chain 1112 1440 . . . ID=PRO_0000039665;Note=Protein 2C Q9YLJ1 UniProtKB Chain 1441 2196 . . . ID=PRO_0000426380;Note=P3 Q9YLJ1 UniProtKB Chain 1441 1551 . . . ID=PRO_0000426381;Note=Protein 3AB Q9YLJ1 UniProtKB Chain 1441 1529 . . . ID=PRO_0000039666;Note=Protein 3A Q9YLJ1 UniProtKB Chain 1530 1551 . . . ID=PRO_0000426382;Note=Viral protein genome-linked Q9YLJ1 UniProtKB Chain 1552 2196 . . . ID=PRO_0000426383;Note=Protein 3CD Q9YLJ1 UniProtKB Chain 1552 1734 . . . ID=PRO_0000426384;Note=Protease 3C Q9YLJ1 UniProtKB Chain 1735 2196 . . . ID=PRO_0000426385;Note=RNA-directed RNA polymerase Q9YLJ1 UniProtKB Topological domain 2 1506 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9YLJ1 UniProtKB Intramembrane 1507 1522 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9YLJ1 UniProtKB Topological domain 1523 2196 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9YLJ1 UniProtKB Domain 1216 1372 . . . Note=SF3 helicase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00551 Q9YLJ1 UniProtKB Domain 1552 1730 . . . Note=Peptidase C3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9YLJ1 UniProtKB Domain 1961 2077 . . . Note=RdRp catalytic;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00539 Q9YLJ1 UniProtKB Zinc finger 1380 1397 . . . Note=C4-type%3B degenerate;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9YLJ1 UniProtKB Region 568 584 . . . Note=Amphipathic alpha-helix;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q9YLJ1 UniProtKB Region 1112 1250 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Region 1112 1184 . . . Note=Membrane-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Region 1133 1137 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Region 1424 1431 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Region 1435 1440 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Active site 883 883 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Active site 901 901 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Active site 972 972 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Active site 1591 1591 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9YLJ1 UniProtKB Active site 1622 1622 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9YLJ1 UniProtKB Active site 1698 1698 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q9YLJ1 UniProtKB Binding site 918 918 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9YLJ1 UniProtKB Binding site 920 920 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9YLJ1 UniProtKB Binding site 978 978 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9YLJ1 UniProtKB Binding site 980 980 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q9YLJ1 UniProtKB Binding site 1380 1380 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9YLJ1 UniProtKB Binding site 1392 1392 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9YLJ1 UniProtKB Binding site 1397 1397 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q9YLJ1 UniProtKB Binding site 1967 1967 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Binding site 1967 1967 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Binding site 2063 2063 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Binding site 2063 2063 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Site 69 70 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Site 331 332 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 862 863 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1012 1013 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1111 1112 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1136 1136 . . . Note=Involved in the interaction with host RTN3;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q66478 Q9YLJ1 UniProtKB Site 1440 1441 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1529 1530 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1551 1552 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Site 1734 1735 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q9YLJ1 UniProtKB Modified residue 1532 1532 . . . Note=O-(5'-phospho-RNA)-tyrosine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q9YLJ1 UniProtKB Lipidation 2 2 . . . Note=N-myristoyl glycine%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300