Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q9YLJ1 (POLG_EC05N) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 125. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Genome polyprotein

Cleaved into the following 17 chains:

  1. P3
  2. Protein 3AB
  3. P2
  4. P1
  5. Capsid protein VP0
    Alternative name(s):
    VP4-VP2
  6. Capsid protein VP4
    Alternative name(s):
    P1A
    Virion protein 4
  7. Capsid protein VP2
    Alternative name(s):
    P1B
    Virion protein 2
  8. Capsid protein VP3
    Alternative name(s):
    P1C
    Virion protein 3
  9. Capsid protein VP1
    Alternative name(s):
    P1D
    Virion protein 1
  10. Protease 2A
    Short name=P2A
    EC=3.4.22.29
    Alternative name(s):
    Picornain 2A
    Protein 2A
  11. Protein 2B
    Short name=P2B
  12. Protein 2C
    Short name=P2C
    EC=3.6.1.15
  13. Protein 3A
    Short name=P3A
  14. Viral protein genome-linked
    Short name=VPg
    Alternative name(s):
    Protein 3B
    Short name=P3B
  15. Protein 3CD
    EC=3.4.22.28
  16. Protease 3C
    Short name=P3C
    EC=3.4.22.28
  17. RNA-directed RNA polymerase
    Short name=RdRp
    EC=2.7.7.48
    Alternative name(s):
    3D polymerase
    Short name=3Dpol
    Protein 3D
    Short name=3D
OrganismEchovirus 5 (strain Noyce) [Complete proteome]
Taxonomic identifier176283 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeEnterovirusEnterovirus B
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length2196 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein VP1: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome. Capsid protein VP1 mainly forms the vertices of the capsid. Capsid protein VP1 interacts with host cell receptor to provide virion attachment to target host cells. This attachment induces virion internalization. Tyrosine kinases are probably involved in the entry process. After binding to its receptor, the capsid undergoes conformational changes. Capsid protein VP1 N-terminus (that contains an amphipathic alpha-helix) and capsid protein VP4 are externalized. Together, they shape a pore in the host membrane through which viral genome is translocated to host cell cytoplasm. After genome has been released, the channel shrinks By similarity.

Capsid protein VP2: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.

Capsid protein VP3: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome By similarity.

Capsid protein VP4: Lies on the inner surface of the capsid shell. After binding to the host receptor, the capsid undergoes conformational changes. Capsid protein VP4 is released, Capsid protein VP1 N-terminus is externalized, and together, they shape a pore in the host membrane through which the viral genome is translocated into the host cell cytoplasm. After genome has been released, the channel shrinks By similarity.

Capsid protein VP0: Component of immature procapsids, which is cleaved into capsid proteins VP4 and VP2 after maturation. Allows the capsid to remain inactive before the maturation step By similarity.

Protein 2A: Cysteine protease that cleaves viral polyprotein and specific host proteins. It is responsible for the cleavage between the P1 and P2 regions, first cleavage occurring in the polyprotein. Cleaves also the host translation initiation factor EIF4G1, in order to shut down the capped cellular mRNA translation. Inhibits the host nucleus-cytoplasm protein and RNA trafficking by cleaving host members of the nuclear pores By similarity.

Protein 2B: Plays an essential role in the virus replication cycle by acting as a viroporin. Creates a pore in the host reticulum endoplasmic and as a consequence releases Ca2+ in the cytoplasm of infected cell. In turn, high levels of cyctoplasmic calcium may trigger membrane trafficking and transport of viral ER-associated proteins to viroplasms, sites of viral genome replication By similarity.

Protein 2C: Induces and associates with structural rearrangements of intracellular membranes. Displays RNA-binding, nucleotide binding and NTPase activities. May play a role in virion morphogenesis and viral RNA encapsidation by interacting with the capsid protein VP3 By similarity.

Protein 3AB: Localizes the viral replication complex to the surface of membranous vesicles. Together with protein 3CD binds the Cis-Active RNA Element (CRE) which is involved in RNA synthesis initiation. Acts as a cofactor to stimulate the activity of 3D polymerase, maybe through a nucleid acid chaperone activity By similarity.

Protein 3A: Localizes the viral replication complex to the surface of membranous vesicles. It inhibits host cell endoplasmic reticulum-to-Golgi apparatus transport and causes the dissassembly of the Golgi complex, possibly through GBF1 interaction. This would result in depletion of MHC, trail receptors and IFN receptors at the host cell surface By similarity.

Viral protein genome-linked: acts as a primer for viral RNA replication and remains covalently bound to viral genomic RNA. VPg is uridylylated prior to priming replication into VPg-pUpU. The oriI viral genomic sequence may act as a template for this. The VPg-pUpU is then used as primer on the genomic RNA poly(A) by the RNA-dependent RNA polymerase to replicate the viral genome. VPg may be removed in the cytoplasm by an unknown enzyme termed "unlinkase". VPg is not cleaved off virion genomes because replicated genomic RNA are encapsidated at the site of replication By similarity.

Protein 3CD: Is involved in the viral replication complex and viral polypeptide maturation. It exhibits protease activity with a specificity and catalytic efficiency that is different from protease 3C. Protein 3CD lacks polymerase activity. The 3C domain in the context of protein 3CD may have an RNA binding activity By similarity.

Protease 3C: cleaves host DDX58/RIG-I and thus contributes to the inhibition of type I interferon production. Cleaves also host PABPC1 By similarity.

RNA-directed RNA polymerase: Replicates the viral genomic RNA on the surface of intracellular membranes. May form linear arrays of subunits that propagate along a strong head-to-tail interaction called interface-I. Covalently attaches UMP to a tyrosine of VPg, which is used to prime RNA synthesis. The positive stranded RNA genome is first replicated at virus induced membranous vesicles, creating a dsRNA genomic replication form. This dsRNA is then used as template to synthesize positive stranded RNA genomes. ss+RNA genomes are either translated, replicated or encapsidated By similarity.

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Selective cleavage of Tyr-|-Gly bond in the picornavirus polyprotein.

Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.

NTP + H2O = NDP + phosphate.

Enzyme regulation

RNA-directed RNA polymerase: replication or transcription is subject to high level of random mutations by the nucleotide analog ribavirin.

Subunit structure

Capsid protein VP1: Interacts with capsid protein VP0, and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Capsid protein VP0: interacts with capsid protein VP1 and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Capsid protein VP2: Interacts with capsid protein VP1 and capsid protein VP3 in the mature capsid By similarity. Capsid protein VP3: interacts with capsid protein VP0 and capsid protein VP1 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid By similarity. Capsid protein VP4: Interacts with capsid protein VP1 and capsid protein VP3 By similarity. Protein 2C: interacts with capsid protein VP3; this interaction may be important for virion morphogenesis By similarity. Protein 3AB: interacts with protein 3CD By similarity. Viral protein genome-linked: interacts with RNA-directed RNA polymerase By similarity. Protein 3CD: interacts with protein 3AB and with RNA-directed RNA polymerase. RNA-directed RNA polymerase: interacts with viral protein genome-linked and with protein 3CD By similarity.

Subcellular location

Capsid protein VP0: Virion By similarity. Host cytoplasm By similarity.

Capsid protein VP4: Virion By similarity.

Capsid protein VP2: Virion By similarity. Host cytoplasm By similarity.

Capsid protein VP3: Virion By similarity. Host cytoplasm By similarity.

Capsid protein VP1: Virion By similarity. Host cytoplasm By similarity.

Protein 2B: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Protein 2C: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Protein 3A: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Protein 3AB: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Viral protein genome-linked: Virion By similarity. Host cytoplasm By similarity.

Protease 3C: Host cytoplasm By similarity.

Protein 3CD: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

RNA-directed RNA polymerase: Host cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side Potential. Note: Probably localizes to the surface of intracellular membrane vesicles that are induced after virus infection as the site for viral RNA replication. These vesicles are derived from the endoplasmic reticulum.

Post-translational modification

Specific enzymatic cleavages in vivo by the viral proteases yield a variety of precursors and mature proteins. Polyprotein processing intermediates such as VP0 which is a VP4-VP2 precursor are produced. During virion maturation, non-infectious particles are rendered infectious following cleavage of VP0. This maturation cleavage is followed by a conformational change of the particle By similarity.

VPg is uridylylated by the polymerase and is covalently linked to the 5'-end of genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase By similarity.

Myristoylation of VP4 is required during RNA encapsidation and formation of the mature virus particle By similarity.

Capsid protein VP0: Myristoylation is required for the formation of pentamers during virus assembly. Further assembly of 12 pentamers and a molecule of genomic RNA generates the provirion By similarity.

Genome polyprotein: Specific enzymatic cleavages in vivo by the viral proteases yield processing intermediates and the mature proteins By similarity.

Capsid protein VP0: During virion maturation, immature virions are rendered infectious following cleavage of VP0 into VP4 and VP2. This maturation seems to be an autocatalytic event triggered by the presence of RNA in the capsid and it is followed by a conformational change infectious virion By similarity.

Viral protein genome-linked: VPg is uridylylated by the polymerase into VPg-pUpU. This acts as a nucleotide-peptide primer for the genomic RNA replication By similarity.

Sequence similarities

Belongs to the picornaviruses polyprotein family.

Contains 1 peptidase C3 domain.

Contains 1 RdRp catalytic domain.

Contains 1 SF3 helicase domain.

Ontologies

Keywords
   Biological processActivation of host autophagy by virus
DNA replication
Eukaryotic host gene expression shutoff by virus
Eukaryotic host translation shutoff by virus
Host gene expression shutoff by virus
Host mRNA suppression by virus
Host-virus interaction
Inhibition of host innate immune response by virus
Inhibition of host mRNA nuclear export by virus
Inhibition of host RIG-I by virus
Inhibition of host RLR pathway by virus
Ion transport
Pore-mediated penetration of viral genome into host cell
Transport
Viral attachment to host cell
Viral immunoevasion
Viral penetration into host cytoplasm
Viral RNA replication
Virus endocytosis by host
Virus entry into host cell
   Cellular componentCapsid protein
Host cytoplasm
Host cytoplasmic vesicle
Host membrane
Membrane
T=pseudo3 icosahedral capsid protein
Virion
   DomainRepeat
   LigandATP-binding
Nucleotide-binding
RNA-binding
   Molecular functionHelicase
Hydrolase
Ion channel
Nucleotidyltransferase
Protease
RNA-directed RNA polymerase
Thiol protease
Transferase
Viral ion channel
   PTMCovalent protein-RNA linkage
Lipoprotein
Myristate
Phosphoprotein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA replication

Inferred from electronic annotation. Source: UniProtKB-KW

RNA-protein covalent cross-linking

Inferred from electronic annotation. Source: UniProtKB-KW

endocytosis involved in viral entry into host cell

Inferred from electronic annotation. Source: UniProtKB-KW

induction by virus of host autophagy

Inferred from sequence or structural similarity. Source: UniProtKB

pore formation by virus in membrane of host cell

Inferred from electronic annotation. Source: UniProtKB-KW

pore-mediated entry of viral genome into host cell

Inferred from electronic annotation. Source: UniProtKB-KW

protein oligomerization

Inferred from electronic annotation. Source: UniProtKB-KW

suppression by virus of host RIG-I activity by RIG-I proteolysis

Inferred from sequence or structural similarity. Source: UniProtKB

suppression by virus of host mRNA export from nucleus

Inferred from electronic annotation. Source: UniProtKB-KW

suppression by virus of host translation

Inferred from electronic annotation. Source: UniProtKB-KW

transcription, DNA-templated

Inferred from electronic annotation. Source: InterPro

viral RNA genome replication

Inferred from electronic annotation. Source: InterPro

virion attachment to host cell

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentT=pseudo3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

host cell cytoplasmic vesicle membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral to membrane of host cell

Inferred from electronic annotation. Source: UniProtKB-KW

membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

RNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

RNA helicase activity

Inferred from electronic annotation. Source: InterPro

RNA-directed RNA polymerase activity

Inferred from electronic annotation. Source: UniProtKB-KW

cysteine-type endopeptidase activity

Inferred from electronic annotation. Source: InterPro

ion channel activity

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed; by host By similarity
Chain2 – 21962195Genome polyprotein By similarity
PRO_0000426371
Chain2 – 852851P1 By similarity
PRO_0000426372
Chain2 – 331330Capsid protein VP0 Potential
PRO_0000426373
Chain2 – 6968Capsid protein VP4 Potential
PRO_0000426374
Chain70 – 331262Capsid protein VP2 Potential
PRO_0000426375
Chain332 – 568237Capsid protein VP3 Potential
PRO_0000426376
Chain568 – 852285Capsid protein VP1 Potential
PRO_0000426377
Chain853 – 1440588P2 By similarity
PRO_0000426378
Chain853 – 1012160Protease 2A Potential
PRO_0000426379
Chain1013 – 111199Protein 2B Potential
PRO_0000039664
Chain1112 – 1440329Protein 2C Potential
PRO_0000039665
Chain1441 – 2196756P3 By similarity
PRO_0000426380
Chain1441 – 1551111Protein 3AB Potential
PRO_0000426381
Chain1441 – 152989Protein 3A Potential
PRO_0000039666
Chain1530 – 155122Viral protein genome-linked Potential
PRO_0000426382
Chain1552 – 2196645Protein 3CD Potential
PRO_0000426383
Chain1552 – 1733182Protease 3C Potential
PRO_0000426384
Chain1734 – 2196463RNA-directed RNA polymerase By similarity
PRO_0000426385

Regions

Topological domain2 – 15061505Cytoplasmic Potential
Intramembrane1507 – 152216 Potential
Topological domain1523 – 2196674Cytoplasmic Potential
Domain1216 – 1372157SF3 helicase
Domain1552 – 1717166Peptidase C3
Domain1961 – 2077117RdRp catalytic
Region568 – 58417Amphipatic alpha-helix Potential
Region1441 – 146424Disordered By similarity

Sites

Active site8831For Protease 2A activity By similarity
Active site9011For Protease 2A activity By similarity
Active site9721For Protease 2A activity By similarity
Active site15911For Protease 3C activity Potential
Active site16221For Protease 3C activity Potential
Active site16981For Protease 3C activity By similarity
Active site20631For RdRp activity By similarity
Site69 – 702Cleavage; by autolysis Potential
Site331 – 3322Cleavage; by Protease 3C Potential
Site1012 – 10132Cleavage; by Protease 3C Potential
Site1440 – 14412Cleavage; by Protease 3C Potential
Site1529 – 15302Cleavage; by Protease 3C Potential
Site1551 – 15522Cleavage; by Protease 3C Potential
Site1734 – 17352Cleavage; by Protease 3C Potential

Amino acid modifications

Modified residue15321O-(5'-phospho-RNA)-tyrosine By similarity
Lipidation21N-myristoyl glycine; by host By similarity

Sequences

Sequence LengthMass (Da)Tools
Q9YLJ1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 7F706FC46E10DCAD

FASTA2,196245,241
        10         20         30         40         50         60 
MGAQVSTQKT GAHETLLEAA HGATINYTNI NYYKDAASNS ANRQDFSQDP GKFTEPVKDL 

        70         80         90        100        110        120 
MIKSMPALNS PSAEECGFSD RVRSLTLGNS TITTQESANV VVGYGRWPDY LADDQATAED 

       130        140        150        160        170        180 
QPTQPDVATC RFYTLESVSW QSGSAGWWWK FPEALKDMGL FGQNMYYHYL GRAGYTIHVQ 

       190        200        210        220        230        240 
CNASKFHQGC LLVVCVPEAE MGCADVTSVV TALNLINGED AHTFSPSEAT AEAGKVQTAV 

       250        260        270        280        290        300 
CNAGMGVAVG NLTIFPHQWI NLRTNNCATI VMPYINSVPM DNMFRHYNFT LMVIPFAPLA 

       310        320        330        340        350        360 
SQGGSTYVPI TITIAPMCAE YNGLRLSTQP QGLPVMNTPG SNQFLTSDDF QSPCAMPEFD 

       370        380        390        400        410        420 
VTPPMDIPGE VRNIMEIAEV DSVVPVNNMS SKVKTIEAYQ IPVSVGTTVR GDAIFSFQLN 

       430        440        450        460        470        480 
PGNSPVLNRT LLGEIINYYA HWSGSIKLTF LFCGSAMATG KLLLAYSPPG ASVPTSRKDA 

       490        500        510        520        530        540 
MLGTHIIWDL GLQSSCVLCV PWISQTHYRM VQQDEYSAAG YITCWYQTNI IVPPDTPTDC 

       550        560        570        580        590        600 
IVLCFVSACN DFSVRMLKDT PFVEQEADLQ GDSEHAVESA VSRVADTIMS GPSNSQQVPA 

       610        620        630        640        650        660 
LTAVETGHTS QVVPSDTIQT RHVQNFHSRS ESTIENFLSR SACVHIANYN AKGDKTDVNR 

       670        680        690        700        710        720 
FDRWEINIRE MVQLRRKCEM FTYLRFDIEV TFVITSKQDQ GPKLNQDMPV LTHQIMYVPP 

       730        740        750        760        770        780 
GGSVPSTVES YAWQTSTNPS VFWTEGNAPA RMSIPFISIG NAYSSFYDGW SHFTQKGVYG 

       790        800        810        820        830        840 
YNTLNKMGQL FVRHVNKETP TPVTSTIRVY FKPKHIRAWV PRPPRLCPYV NKTNVNFITT 

       850        860        870        880        890        900 
QVTEPRNDLN DVPKSEHNMH TYGAFGQQSG AVYVGNYRVV NRHLATHNDW QNCVWEDYNR 

       910        920        930        940        950        960 
DLLVSTTTAQ GCDTIARCHC TTGVYFCSSR NRHYPVSFEG PGLVEVQESE YYPKRYQSHV 

       970        980        990       1000       1010       1020 
LLAAGFSEPG DCGGILRCEH GVIGIVTMGG EGVVGFADVR DLLWLEDDAM EQGVKDYVEQ 

      1030       1040       1050       1060       1070       1080 
LGNAFGSGFT NQICEQVNLL KESLVGQDSI LEKSLKALVK IISALVIVVR NHDDLITVTA 

      1090       1100       1110       1120       1130       1140 
TLALIGCTSS PWRWLKQKVS QYYGIPMAER QNNGWLKKFT EMTNACKGME WIAIKIQKFI 

      1150       1160       1170       1180       1190       1200 
EWLKVKILPE VKEKHEFLNR LKQLPLLESQ IATIEQSAPS QSDQEQLFSN VQYFAHYCRK 

      1210       1220       1230       1240       1250       1260 
YAPLYAAEAK RVFSLEKKMS NYIQFKSKCR IEPVCLLLHG SPGAGKSVAT NLIGRSLAEK 

      1270       1280       1290       1300       1310       1320 
LNSSVYSLPP DPDHFDGYKQ QAVVIMDDLC QNPDGKDVSL FCQMVSSVDF VPPMAALEEK 

      1330       1340       1350       1360       1370       1380 
GILFTSPFVL ASTNAGSINA PTVSDSRALA RRFHFDMNIE VISMYSQNGK INMPMSVKTC 

      1390       1400       1410       1420       1430       1440 
DEECCPVNFK KCCPLVCGKA IQFIDRRTQV RYSLDMLVTE MFREYNHRHS VGATLEALFQ 

      1450       1460       1470       1480       1490       1500 
GPPLYREIKI SVAPETPPPP AIADLLKSVD SEAVREYCKE KGWLVPEINS TLQIEKHVSR 

      1510       1520       1530       1540       1550       1560 
AFICLQALTT FVSVAGIIYI IYKLFAGFQG AYTGMPNQKP KVPTLRQAKV QGPAFEFAVA 

      1570       1580       1590       1600       1610       1620 
MMKRNSSTVK TEYGEFTMLG IYDRWAVLPR HAKPGPTILM NDQEVGVLDA KELVDKDGTN 

      1630       1640       1650       1660       1670       1680 
LELTLLKLNR NEKFRDIRGF LAKEEVEVNE AVLAINTSKF PNMYIPVGQV TDYGFLNLGG 

      1690       1700       1710       1720       1730       1740 
TPTKRMLMYN FPTRAGQCGG VLMSTGKVLG IHVGGNGHQG FSAALLKHYF NDEQGEIEFI 

      1750       1760       1770       1780       1790       1800 
ESSKDAGFPI INTPSKTKLE PSVFHQVFEG NKEPAVLRSG DPRLKANFEE AIFSKYIGNV 

      1810       1820       1830       1840       1850       1860 
NTHVDEYMME AVDHYAGQLA TLDISTEPMK LEDAVYGTEG LEALDLTTSA GYPYVALGIK 

      1870       1880       1890       1900       1910       1920 
KRDILSKRTK DLTKLKECMD KYGLNLPMVT YVKDELRSAE KVAKGKSRLI EASSLNDSVA 

      1930       1940       1950       1960       1970       1980 
MRQTFGNLYK TFHLNPGIVT GSAVGCDPDL FWSKIPVMLD GHLIAFDYSG YDASLSPVWF 

      1990       2000       2010       2020       2030       2040 
ACLKMLLEKL GYTHKETNYI DYLCNSHHLY RDKHYFVRGG MPSGCSGTSI FNSMINNIII 

      2050       2060       2070       2080       2090       2100 
RTLMLKVYKG IDLDQFRMIA YGDDVIASYP WPIDASLLAE AGKDYGLIMT PADKGECFNE 

      2110       2120       2130       2140       2150       2160 
VTWTNVTFLK RYFRADEQYP FLVHPVMPMK DIHESIRWTK DPKNTQDHVR SLCLLAWHNG 

      2170       2180       2190 
EHEYEEFIRK IRSVPVGRCL TLPAFSTLRR KWLDSF 

« Hide

References

[1]"Echovirus 5: infectious transcripts and complete nucleotide sequence from uncloned cDNA."
Lindberg A.M., Johansson S., Andersson A.
Virus Res. 59:75-87(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF083069 Genomic RNA. Translation: AAD19342.1.

3D structure databases

ProteinModelPortalQ9YLJ1.
SMRQ9YLJ1. Positions 2-69, 79-328, 332-855, 863-1012, 1552-2196.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

MEROPSC03.011.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.120.20. 3 hits.
4.10.80.10. 2 hits.
InterProIPR003593. AAA+_ATPase.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR014838. P3A.
IPR000081. Peptidase_C3.
IPR000199. Peptidase_C3A/C3B_picornavir.
IPR003138. Pico_P1A.
IPR002527. Pico_P2B.
IPR001676. Picornavirus_capsid.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view]
PfamPF08727. P3A. 1 hit.
PF00548. Peptidase_C3. 1 hit.
PF02226. Pico_P1A. 1 hit.
PF00947. Pico_P2A. 1 hit.
PF01552. Pico_P2B. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00073. Rhv. 3 hits.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
ProDomPD001306. Peptidase_C3. 1 hit.
PD649346. Pico_P2B. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF50494. SSF50494. 2 hits.
SSF52540. SSF52540. 1 hit.
SSF89043. SSF89043. 1 hit.
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry namePOLG_EC05N
AccessionPrimary (citable) accession number: Q9YLJ1
Entry history
Integrated into UniProtKB/Swiss-Prot: November 2, 2001
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 125 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Peptidase families

Classification of peptidase families and list of entries