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Protein

Genome polyprotein

Gene
N/A
Organism
Coxsackievirus B2 (strain Ohio-1)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Capsid protein VP1: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome. Capsid protein VP1 mainly forms the vertices of the capsid. Capsid protein VP1 interacts with host CXADR to provide virion attachment to target host cells. This attachment induces virion internalization. Tyrosine kinases are probably involved in the entry process. After binding to its receptor, the capsid undergoes conformational changes. Capsid protein VP1 N-terminus (that contains an amphipathic alpha-helix) and capsid protein VP4 are externalized. Together, they shape a pore in the host membrane through which viral genome is translocated to host cell cytoplasm. After genome has been released, the channel shrinks (By similarity).By similarity
Capsid protein VP2: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome (By similarity).By similarity
Capsid protein VP3: Forms an icosahedral capsid of pseudo T=3 symmetry with capsid proteins VP2 and VP3. The capsid is 300 Angstroms in diameter, composed of 60 copies of each capsid protein and enclosing the viral positive strand RNA genome (By similarity).By similarity
Capsid protein VP4: Lies on the inner surface of the capsid shell. After binding to the host receptor, the capsid undergoes conformational changes. Capsid protein VP4 is released, Capsid protein VP1 N-terminus is externalized, and together, they shape a pore in the host membrane through which the viral genome is translocated into the host cell cytoplasm. After genome has been released, the channel shrinks (By similarity).By similarity
Capsid protein VP0: Component of immature procapsids, which is cleaved into capsid proteins VP4 and VP2 after maturation. Allows the capsid to remain inactive before the maturation step (By similarity).By similarity
Protein 2A: Cysteine protease that cleaves viral polyprotein and specific host proteins. It is responsible for the cleavage between the P1 and P2 regions, first cleavage occurring in the polyprotein. Cleaves also the host translation initiation factor EIF4G1, in order to shut down the capped cellular mRNA translation. Inhibits the host nucleus-cytoplasm protein and RNA trafficking by cleaving host members of the nuclear pores (By similarity).By similarity
Protein 2B: Plays an essential role in the virus replication cycle by acting as a viroporin. Creates a pore in the host reticulum endoplasmic and as a consequence releases Ca2+ in the cytoplasm of infected cell. In turn, high levels of cyctoplasmic calcium may trigger membrane trafficking and transport of viral ER-associated proteins to viroplasms, sites of viral genome replication (By similarity).By similarity
Protein 2C: Induces and associates with structural rearrangements of intracellular membranes. Displays RNA-binding, nucleotide binding and NTPase activities. May play a role in virion morphogenesis and viral RNA encapsidation by interacting with the capsid protein VP3 (By similarity).By similarity
Protein 3AB: Localizes the viral replication complex to the surface of membranous vesicles. Together with protein 3CD binds the Cis-Active RNA Element (CRE) which is involved in RNA synthesis initiation. Acts as a cofactor to stimulate the activity of 3D polymerase, maybe through a nucleid acid chaperone activity (By similarity).By similarity
Protein 3A: Localizes the viral replication complex to the surface of membranous vesicles. It inhibits host cell endoplasmic reticulum-to-Golgi apparatus transport and causes the dissassembly of the Golgi complex, possibly through GBF1 interaction. This would result in depletion of MHC, trail receptors and IFN receptors at the host cell surface (By similarity).By similarity
Viral protein genome-linked: acts as a primer for viral RNA replication and remains covalently bound to viral genomic RNA. VPg is uridylylated prior to priming replication into VPg-pUpU. The oriI viral genomic sequence may act as a template for this. The VPg-pUpU is then used as primer on the genomic RNA poly(A) by the RNA-dependent RNA polymerase to replicate the viral genome. VPg may be removed in the cytoplasm by an unknown enzyme termed "unlinkase". VPg is not cleaved off virion genomes because replicated genomic RNA are encapsidated at the site of replication (By similarity).By similarity
Protein 3CD: Is involved in the viral replication complex and viral polypeptide maturation. It exhibits protease activity with a specificity and catalytic efficiency that is different from protease 3C. Protein 3CD lacks polymerase activity. The 3C domain in the context of protein 3CD may have an RNA binding activity (By similarity).By similarity
Protease 3C: cleaves host DDX58/RIG-I and thus contributes to the inhibition of type I interferon production. Cleaves also host PABPC1 (By similarity).By similarity
RNA-directed RNA polymerase: Replicates the viral genomic RNA on the surface of intracellular membranes. May form linear arrays of subunits that propagate along a strong head-to-tail interaction called interface-I. Covalently attaches UMP to a tyrosine of VPg, which is used to prime RNA synthesis. The positive stranded RNA genome is first replicated at virus induced membranous vesicles, creating a dsRNA genomic replication form. This dsRNA is then used as template to synthesize positive stranded RNA genomes. ss+RNA genomes are either translated, replicated or encapsidated (By similarity).PROSITE-ProRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).PROSITE-ProRule annotation
Selective cleavage of Tyr-|-Gly bond in the picornavirus polyprotein.
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
NTP + H2O = NDP + phosphate.

Enzyme regulationi

RNA-directed RNA polymerase: replication or transcription is subject to high level of random mutations by the nucleotide analog ribavirin.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei69 – 702Cleavage; by autolysisSequence Analysis
Sitei333 – 3342Cleavage; by Protease 3CSequence Analysis
Sitei853 – 8542Cleavage; by Protease 2ASequence Analysis
Active sitei874 – 8741For Protease 2A activityBy similarity
Active sitei892 – 8921For Protease 2A activityBy similarity
Active sitei963 – 9631For Protease 2A activityBy similarity
Sitei1003 – 10042Cleavage; by Protease 3CSequence Analysis
Sitei1431 – 14322Cleavage; by Protease 3CSequence Analysis
Sitei1520 – 15212Cleavage; by Protease 3CSequence Analysis
Sitei1542 – 15432Cleavage; by Protease 3CSequence Analysis
Active sitei1582 – 15821For Protease 3C activitySequence Analysis
Active sitei1613 – 16131For Protease 3C activitySequence Analysis
Active sitei1689 – 16891For Protease 3C activityBy similarity
Sitei1725 – 17262Cleavage; by Protease 3CSequence Analysis
Active sitei2054 – 20541For RdRp activityBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase, Ion channel, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Thiol protease, Transferase, Viral ion channel

Keywords - Biological processi

Activation of host autophagy by virus, DNA replication, Eukaryotic host gene expression shutoff by virus, Eukaryotic host translation shutoff by virus, Host gene expression shutoff by virus, Host mRNA suppression by virus, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host mRNA nuclear export by virus, Inhibition of host RIG-I by virus, Inhibition of host RLR pathway by virus, Ion transport, Pore-mediated penetration of viral genome into host cell, Transport, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus endocytosis by host, Virus entry into host cell

Keywords - Ligandi

ATP-binding, Nucleotide-binding, RNA-binding

Protein family/group databases

MEROPSiC03.011.

Names & Taxonomyi

Protein namesi
Recommended name:
Genome polyprotein
Cleaved into the following 17 chains:
Alternative name(s):
VP4-VP2
Alternative name(s):
P1A
Virion protein 4
Alternative name(s):
P1B
Virion protein 2
Alternative name(s):
P1C
Virion protein 3
Alternative name(s):
P1D
Virion protein 1
Protease 2A (EC:3.4.22.29)
Short name:
P2A
Alternative name(s):
Picornain 2A
Protein 2A
Protein 2B
Short name:
P2B
Protein 2C (EC:3.6.1.15)
Short name:
P2C
Protein 3A
Short name:
P3A
Alternative name(s):
Protein 3B
Short name:
P3B
Protease 3C (EC:3.4.22.28)
Short name:
P3C
Alternative name(s):
3D polymerase
Short name:
3Dpol
Protein 3D
Short name:
3D
OrganismiCoxsackievirus B2 (strain Ohio-1)
Taxonomic identifieri231473 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeEnterovirusEnterovirus B
Virus hostiHomo sapiens (Human) [TaxID: 9606]
ProteomesiUP000007529 Componenti: Genome

Subcellular locationi

Capsid protein VP0 :
Capsid protein VP4 :
Capsid protein VP2 :
Capsid protein VP3 :
Capsid protein VP1 :
Protein 2B :
Protein 2C :
Protein 3A :
Protein 3AB :
Protease 3C :
Protein 3CD :
RNA-directed RNA polymerase :

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini2 – 14971496CytoplasmicSequence AnalysisAdd
BLAST
Intramembranei1498 – 151316Sequence AnalysisAdd
BLAST
Topological domaini1514 – 2187674CytoplasmicSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Host cytoplasmic vesicle, Host membrane, Membrane, T=pseudo3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed; by hostBy similarity
Chaini2 – 21872186Genome polyproteinBy similarityPRO_0000426251Add
BLAST
Chaini2 – 853852P1By similarityPRO_0000426252Add
BLAST
Chaini2 – 333332Capsid protein VP0Sequence AnalysisPRO_0000426253Add
BLAST
Chaini2 – 6968Capsid protein VP4Sequence AnalysisPRO_0000426254Add
BLAST
Chaini70 – 333264Capsid protein VP2Sequence AnalysisPRO_0000426255Add
BLAST
Chaini334 – 569236Capsid protein VP3Sequence AnalysisPRO_0000426256Add
BLAST
Chaini569 – 853285Capsid protein VP1Sequence AnalysisPRO_0000426257Add
BLAST
Chaini854 – 1431578P2By similarityPRO_0000426258Add
BLAST
Chaini854 – 1003150Protease 2ASequence AnalysisPRO_0000426259Add
BLAST
Chaini1004 – 110299Protein 2BSequence AnalysisPRO_0000039576Add
BLAST
Chaini1103 – 1431329Protein 2CSequence AnalysisPRO_0000039577Add
BLAST
Chaini1432 – 2187756P3By similarityPRO_0000426260Add
BLAST
Chaini1432 – 1542111Protein 3ABSequence AnalysisPRO_0000426261Add
BLAST
Chaini1432 – 152089Protein 3ASequence AnalysisPRO_0000039578Add
BLAST
Chaini1521 – 154222Viral protein genome-linkedSequence AnalysisPRO_0000426262Add
BLAST
Chaini1543 – 2187645Protein 3CDSequence AnalysisPRO_0000426263Add
BLAST
Chaini1543 – 1724182Protease 3CSequence AnalysisPRO_0000426264Add
BLAST
Chaini1725 – 2187463RNA-directed RNA polymeraseBy similarityPRO_0000426265Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi2 – 21N-myristoyl glycine; by hostBy similarity
Modified residuei1523 – 15231O-(5'-phospho-RNA)-tyrosineBy similarity

Post-translational modificationi

Specific enzymatic cleavages in vivo by the viral proteases yield a variety of precursors and mature proteins. Polyprotein processing intermediates such as VP0 which is a VP4-VP2 precursor are produced. During virion maturation, non-infectious particles are rendered infectious following cleavage of VP0. This maturation cleavage is followed by a conformational change of the particle (By similarity).By similarity
VPg is uridylylated by the polymerase and is covalently linked to the 5'-end of genomic RNA. This uridylylated form acts as a nucleotide-peptide primer for the polymerase (By similarity).By similarity
Myristoylation of VP4 is required during RNA encapsidation and formation of the mature virus particle.By similarity
Capsid protein VP0: Myristoylation is required for the formation of pentamers during virus assembly. Further assembly of 12 pentamers and a molecule of genomic RNA generates the provirion (By similarity).By similarity
Genome polyprotein: Specific enzymatic cleavages in vivo by the viral proteases yield processing intermediates and the mature proteins.By similarity
Capsid protein VP0: During virion maturation, immature virions are rendered infectious following cleavage of VP0 into VP4 and VP2. This maturation seems to be an autocatalytic event triggered by the presence of RNA in the capsid and it is followed by a conformational change infectious virion (By similarity).By similarity
Viral protein genome-linked: VPg is uridylylated by the polymerase into VPg-pUpU. This acts as a nucleotide-peptide primer for the genomic RNA replication (By similarity).By similarity

Keywords - PTMi

Covalent protein-RNA linkage, Lipoprotein, Myristate, Phosphoprotein

Interactioni

Subunit structurei

Capsid protein VP1: Interacts with capsid protein VP0, and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid (By similarity). Interact with host CXADR. Capsid protein VP0: interacts with capsid protein VP1 and capsid protein VP3 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Capsid protein VP2: Interacts with capsid protein VP1 and capsid protein VP3 in the mature capsid (By similarity). Capsid protein VP3: interacts with capsid protein VP0 and capsid protein VP1 to form heterotrimeric protomers. Five protomers subsequently associate to form pentamers which serve as building blocks for the capsid. Interacts with capsid protein VP4 in the mature capsid (By similarity). Capsid protein VP4: Interacts with capsid protein VP1 and capsid protein VP3 (By similarity). Protein 2C: interacts with capsid protein VP3; this interaction may be important for virion morphogenesis (By similarity). Protein 3AB: interacts with protein 3CD (By similarity). Viral protein genome-linked: interacts with RNA-directed RNA polymerase (By similarity). Protein 3CD: interacts with protein 3AB and with RNA-directed RNA polymerase. RNA-directed RNA polymerase: interacts with viral protein genome-linked and with protein 3CD (By similarity).By similarity

Structurei

3D structure databases

ProteinModelPortaliQ9YLG5.
SMRiQ9YLG5. Positions 2-69, 77-571, 584-852, 854-1003, 1543-2187.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1207 – 1363157SF3 helicasePROSITE-ProRule annotationAdd
BLAST
Domaini1543 – 1708166Peptidase C3Add
BLAST
Domaini1952 – 2068117RdRp catalyticPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni569 – 58517Amphipatic alpha-helixSequence AnalysisAdd
BLAST
Regioni1432 – 145524DisorderedBy similarityAdd
BLAST

Sequence similaritiesi

Belongs to the picornaviruses polyprotein family.Curated
Contains 1 peptidase C3 domain.Curated
Contains 1 RdRp catalytic domain.PROSITE-ProRule annotation
Contains 1 SF3 helicase domain.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Family and domain databases

Gene3Di2.60.120.20. 3 hits.
4.10.80.10. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR014838. P3A.
IPR000081. Peptidase_C3.
IPR000199. Peptidase_C3A/C3B_picornavir.
IPR003138. Pico_P1A.
IPR002527. Pico_P2B.
IPR001676. Picornavirus_capsid.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF08727. P3A. 1 hit.
PF00548. Peptidase_C3. 1 hit.
PF02226. Pico_P1A. 1 hit.
PF00947. Pico_P2A. 1 hit.
PF01552. Pico_P2B. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00073. Rhv. 3 hits.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
ProDomiPD001306. Peptidase_C3. 1 hit.
PD649346. Pico_P2B. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50494. SSF50494. 2 hits.
SSF52540. SSF52540. 1 hit.
SSF89043. SSF89043. 1 hit.
PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9YLG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAQVSTQKT GAHETGLSAS GGSIIHYTNI NYYKDAASNS ANRQDFTQDP
60 70 80 90 100
GKFTEPVKDI MIKSMPALNS PSAEECGYSD RVRSITLGNS TITTQECANV
110 120 130 140 150
VVGYGTWPRY LSDKEATAED QPTQPDVATC RFYTLSSVQW QRESAGWWWK
160 170 180 190 200
FPDALSDMGL FAQNMMYHYL GRTGYTIHVQ CNASKFHQGC LLVVCVPEAE
210 220 230 240 250
MGCTNKENTP LFEKLCGQDN AKEFTREGPT ISKGATDVQT AVCNAGMGVG
260 270 280 290 300
VGNLTIFPHQ WINLRTNNSA TIVMPYINSV PMDSMIRHNN FTLMIIPFVP
310 320 330 340 350
LDYVNGSSPY IPITVTVAPM SAEYNGLRLA STQGLPTMLT PGSNQFLTSD
360 370 380 390 400
DFQSPSAMPQ FDVTPEMNIP GRVHNLMEIA EVDSVVPLNN IQDNLRKMDI
410 420 430 440 450
YRVQVSSQTS QGAQVFGFSL QPGASSVLQR TLLGEILNYY THWSGSLKLT
460 470 480 490 500
FVFCGSAMAT GKFLLAYSPP GAGVPPDRKK AMLGTHVIWD VGLQSSCVLC
510 520 530 540 550
VPWISQTHYR YTVKDEYTDS GYITCWYQTN VIAPADALST CYIMCMVSAC
560 570 580 590 600
NDFSVRMLRD TRFIKQTAFY QSPVEESIER SIGRVADTIG SGPSNSEAIP
610 620 630 640 650
VLTAVETGHT SQVTPSDTMQ TRHVHNYHSR SESSVENFLA RSACVFYTTY
660 670 680 690 700
TNSKNAAKEK KFATWKVSVR QAAQLRRKLE LFTYLRCDIE LTFVITSAQD
710 720 730 740 750
PSTATNLDVP VLTHQIMYVP PGGPVPETVD DYNWQTSTNP SLFWTEGNAP
760 770 780 790 800
PRMSIPFMSI GNAYSMFYDG WSEFRHDGVY GLNTLNNMGT IYARHVNADN
810 820 830 840 850
PGSITSTVRI YFKPKHVKAW IPRPPRLAQY LKANNVNFKI TDVTEKRDSL
860 870 880 890 900
TTTGAFGQQS GAVYVGNYRV VNRHLATHID WQNCVWEDYN RDLLVSTTTA
910 920 930 940 950
HGCDTIARCQ CTSGVYYCAS KNKHYPVVFE GPGMVEVQES EYYPKRYQSH
960 970 980 990 1000
VLLAAGFSEP GDCGGILRCE HGVIGVVTMG GEGVVGFADV RDLLWLEDDA
1010 1020 1030 1040 1050
MEQGVKDYVE QLGNAFGSGF TNQICEQVNL LKESLVGQDS ILEKSLKALV
1060 1070 1080 1090 1100
RIISALVIVV RNHDDIITVT ATLALIGCTS SPWRWLKQKV SQYYGIPMAE
1110 1120 1130 1140 1150
RQNNGWLKKF TEMTNACKGM EWIAVKIQKF IEWLKVKILP EVKEKHEFLN
1160 1170 1180 1190 1200
RLKQLPLLES QIATIEQSAP SQSDQEQLFS NVQYFAHYCR KYAPLYAAEA
1210 1220 1230 1240 1250
KRVFSLEKKM SNYIQFKSKC RIEPVCLLLH GSPGAGKSVA TNLIGRSLAE
1260 1270 1280 1290 1300
KLNSSVYSLP PDPDHFDGYK QQAVVIMDDL CQNPDGKDVS LFCQMVSSVD
1310 1320 1330 1340 1350
FVPPMAALEE KGILFTSPFV LASTNAGSIN APTVSDSRAL ARRFHFDMNI
1360 1370 1380 1390 1400
EVISMYSQNG KINMPMSVKT CDDECCPVNF KKCCPLVCGK AIQFIDRRTQ
1410 1420 1430 1440 1450
VRYSLDMLVT EMFREYNHRH SVGATLEALF QGPPIYREIK ISVAPETPPP
1460 1470 1480 1490 1500
PAIADLLKSV DSEVVREYCK EKGWLVPEVN STLQIEKHVS RAFICLQALT
1510 1520 1530 1540 1550
TFVSVAGIIY IIYKLFAGFQ GAYTGMPNQK PKVPTLRQAK VQGPAFEFAV
1560 1570 1580 1590 1600
AMMKRNSSTV KTEYGEFTML GIYDRWAVLP RHAKPGPTIL MNDQEVSVLD
1610 1620 1630 1640 1650
AKELVDKDGT NLELVLLKLN RNEKFRDIRG FLAKEEVEVN EAVLAINTSK
1660 1670 1680 1690 1700
FPNMYIPVGQ VTDYGFLNLG GTPTKRMLMY NFPTRAGQCG GVLMSTGKVL
1710 1720 1730 1740 1750
GIHVGGNGHQ GFSAALLKHY FNDEQGEIEF IESSKDAGFP VINAPSRTKL
1760 1770 1780 1790 1800
EPSVFHQVFE GNKEPAVLRN GDPRLKANFE EAIFSKYIGN VNTRVDEYML
1810 1820 1830 1840 1850
EAVDHYAGQL ATLDISTEPM KLEDAVYGTE GLEALDLTTS AGYPYVALGI
1860 1870 1880 1890 1900
KKRDILSKKT KDLTKLKECM DKYGLNLPMV TYVKDELRSA EKVAKGKSRL
1910 1920 1930 1940 1950
IEASSLNDSV AMRQTFGNLY KAFHLNPGIV TGSAVGCDPD MFWSKIPVML
1960 1970 1980 1990 2000
DGHLIAFDYS GYDASLSPVW FACLKLLLEK LGYTHKETNY IDYLCNSHHL
2010 2020 2030 2040 2050
YRDKHYFVRG GMPSGCSGTS IFNSMINNII IRTLMLKVYK GIDLDQFRMI
2060 2070 2080 2090 2100
AYGDDVIASY PWPIDASLLA EAGKDYGLIM TPADKGECFN EVTWTNVTFL
2110 2120 2130 2140 2150
KRYFRADEQY PFLVHPVMPM KDIHESIRWT KDPKNTQDHV RSLCLLAWHN
2160 2170 2180
GEHEYEEFIR KIRSVPVGRC LSLPAFSTLR RKWLDSF
Length:2,187
Mass (Da):244,392
Last modified:January 23, 2007 - v3
Checksum:i11628A42FF9B4C41
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti214 – 2141K → N in AAD46138 (Ref. 2) Curated
Sequence conflicti458 – 4581M → V in AAD46138 (Ref. 2) Curated
Sequence conflicti800 – 8056NPGSIT → TQVASP in AAD46138 (Ref. 2) Curated
Sequence conflicti848 – 8481D → N in AAD46138 (Ref. 2) Curated
Sequence conflicti946 – 9461R → E in AAD46138 (Ref. 2) Curated
Sequence conflicti954 – 9541A → T in AAD46138 (Ref. 2) Curated
Sequence conflicti960 – 9612PG → TR in AAD46138 (Ref. 2) Curated
Sequence conflicti1107 – 11071L → F in AAD46138 (Ref. 2) Curated
Sequence conflicti1111 – 11111T → I in AAD46138 (Ref. 2) Curated
Sequence conflicti1228 – 12281L → F in AAD46138 (Ref. 2) Curated
Sequence conflicti1762 – 17621N → I in AAD46138 (Ref. 2) Curated
Sequence conflicti1935 – 19351V → I in AAD46138 (Ref. 2) Curated
Sequence conflicti2008 – 20081V → L in AAD46138 (Ref. 2) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF085363 Genomic RNA. Translation: AAD19874.1.
AF081485 Genomic RNA. Translation: AAD46138.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF085363 Genomic RNA. Translation: AAD19874.1.
AF081485 Genomic RNA. Translation: AAD46138.1.

3D structure databases

ProteinModelPortaliQ9YLG5.
SMRiQ9YLG5. Positions 2-69, 77-571, 584-852, 854-1003, 1543-2187.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

MEROPSiC03.011.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.120.20. 3 hits.
4.10.80.10. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR014838. P3A.
IPR000081. Peptidase_C3.
IPR000199. Peptidase_C3A/C3B_picornavir.
IPR003138. Pico_P1A.
IPR002527. Pico_P2B.
IPR001676. Picornavirus_capsid.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF08727. P3A. 1 hit.
PF00548. Peptidase_C3. 1 hit.
PF02226. Pico_P1A. 1 hit.
PF00947. Pico_P2A. 1 hit.
PF01552. Pico_P2B. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00073. Rhv. 3 hits.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
ProDomiPD001306. Peptidase_C3. 1 hit.
PD649346. Pico_P2B. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50494. SSF50494. 2 hits.
SSF52540. SSF52540. 1 hit.
SSF89043. SSF89043. 1 hit.
PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic and phylogenetic characterization of coxsackievirus B2 prototype strain Ohio-1."
    Polacek C., Lundgren A., Andersson A., Lindberg A.M.
    Virus Res. 59:229-238(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. "Nucleotide sequence of coxsackievirus B2 Ohio."
    Zell R., Birch-Hirschfeld E., Fortmuller U., Henke A., Stelzner A.
    Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  3. "The coxsackie-adenovirus receptor (CAR) is used by reference strains and clinical isolates representing all six serotypes of coxsackievirus group B and by swine vesicular disease virus."
    Martino T.A., Petric M., Weingartl H., Bergelson J.M., Opavsky M.A., Richardson C.D., Modlin J.F., Finberg R.W., Kain K.C., Willis N., Gauntt C.J., Liu P.P.
    Virology 271:99-108(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH HOST CXADR.

Entry informationi

Entry nameiPOLG_CXB2O
AccessioniPrimary (citable) accession number: Q9YLG5
Secondary accession number(s): Q9QSN9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 23, 2003
Last sequence update: January 23, 2007
Last modified: June 24, 2015
This is version 125 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.