Q9YD40 (Q9YD40_AERPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Succinyl-CoA synthetase alpha chain EMBL BAA80057.2
EC=6.2.1.5 EMBL BAA80057.2

Gene names

Name:	sucD EMBL BAA80057.2
Ordered Locus Names:	APE_1072.1

Organism

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) [Complete proteome] [HAMAP]

Taxonomic identifier

272557 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Desulfurococcales › Desulfurococcaceae › Aeropyrum

Protein attributes

Sequence length	292 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Ligase EMBL BAA80057.2
Technical term	3D-structure PDB 2YV2 Complete proteome
Gene Ontology (GO)
Molecular function	ATP citrate synthase activity Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro succinate-CoA ligase (ADP-forming) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	249	1	Tele-phosphohistidine intermediate By similarity PIRSR PIRSR001553-1

Sequences

	Sequence		Length	Mass (Da)
	Q9YD40 [UniParc]. Last modified November 14, 2006. Version 2. Checksum: C6D0BFC049CE1F75	FASTA	292	30,897
	10 20 30 40 50 60 MAVLVDSETR VLVQGITGRE GSFHAKAMLE YGTKVVAGVT PGKGGSEVHG VPVYDSVKEA 70 80 90 100 110 120 LAEHPEINTS IVFVPAPFAP DAVYEAVDAG IRLVVVITEG IPVHDTMRFV NYARQKGATI 130 140 150 160 170 180 IGPNCPGAIT PGQAKVGIMP GHIFKEGGVA VVSRSGTLTY EISYMLTRQG IGQSTVIGIG 190 200 210 220 230 240 GDPIVGLSFT EALKLFQEDP QTEALVLIGE IGGDMEERAA EMIKKGEFTK PVIAYIAGRT 250 260 270 280 290 APPEKRMGHA GAIIMMGTGT YEGKVKALRE AGVEVAETPF EVPELVRKAL RR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1." Kawarabayasi Y., Hino Y., Horikawa H., Yamazaki S., Haikawa Y., Jin-no K., Takahashi M., Sekine M., Baba S., Ankai A., Kosugi H., Hosoyama A., Fukui S., Nagai Y., Nishijima K., Nakazawa H., Takamiya M., Masuda S. , Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Kubota K., Nakamura Y., Nomura N., Sako Y., Kikuchi H. DNA Res. 6:83-101(1999) [PubMed: 10382966] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1.
[2]	"Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1." Niwa H., Kuramitsu S., Yokoyama S. Submitted (APR-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS).
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000002 Genomic DNA. Translation: BAA80057.2.

PIR

A72707.

RefSeq

NP_147697.2. NC_000854.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2YV2	X-ray	2.20	A	1-292	[»]

ProteinModelPortal

Q9YD40.

SMR

Q9YD40. Positions 4-290.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1445101.

GenomeReviews

Gene locus APE_1072.1 in contig BA000002_GR.

KEGG

ape:APE_1072.1.

NMPDR

fig|272557.1.peg.805.

Organism-specific databases

CMR

Search...

Phylogenomic databases

HOGENOM

HBG615372.

OMA

FIGGRSA.

ProtClustDB

CLSK961092.

Family and domain databases

InterPro

IPR017440. Cit_synth/succinyl-CoA_lig_AS.
IPR003781. CoA-bd.
IPR005810. CoA_lig_alpha.
IPR005811. CoA_ligase.
IPR016040. NAD(P)-bd_dom.
IPR016102. Succinyl-CoA_synth-like.
[Graphical view]

Gene3D

G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
G3DSA:3.40.50.261. Succinyl-CoA_synth-like. 1 hit.

KO

K01902.

Pfam

PF02629. CoA_binding. 1 hit.
PF00549. Ligase_CoA. 1 hit.
[Graphical view]

PIRSF

PIRSF001553. SucCS_alpha. 1 hit.

PRINTS

PR01798. SCOASYNTHASE.

SMART

SM00881. CoA_binding. 1 hit.
[Graphical view]

SUPFAM

SSF52210. CoA_ligase. 1 hit.

TIGRFAMs

TIGR01019. SucCoAalpha. 1 hit.

PROSITE

PS01216. SUCCINYL_COA_LIG_1. 1 hit.
PS00399. SUCCINYL_COA_LIG_2. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9YD40_AERPE

Accession

Primary (citable) accession number: Q9YD40

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1999
Last sequence update:	November 14, 2006
Last modified:	December 14, 2011
This is version 79 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)