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Protein

Ribosome maturation protein SDO1 homolog

Gene

APE_1167.1

Organism
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:APE_1167.1
OrganismiAeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Taxonomic identifieri272557 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeAeropyrum
Proteomesi
  • UP000002518 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001237671 – 233Ribosome maturation protein SDO1 homologAdd BLAST233

Interactioni

Protein-protein interaction databases

STRINGi272557.APE_1167.1.

Structurei

3D structure databases

ProteinModelPortaliQ9YCU5.
SMRiQ9YCU5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
HOGENOMiHOG000229540.
KOiK14574.
OrthoDBiPOG093Z0971.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiView protein in InterPro
IPR035647. EFG_III/V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR036786. Ribosome_mat_SBDS_N_sf.
IPR002140. Sdo1/SBDS.
IPR037188. Sdo1/SBDS_central_sf.
PANTHERiPTHR10927:SF1. PTHR10927:SF1. 1 hit.
PfamiView protein in Pfam
PF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
SUPFAMiSSF109728. SSF109728. 1 hit.
SSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiView protein in PROSITE
PS01267. UPF0023. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9YCU5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRQDYIVA WMEVRGKRFE ILVRPELAFR YKEKGDVDLE DVLWTDTIYR
60 70 80 90 100
DVRKGLKASP EEVKKAFGTS DPRRVAEKIL KEGEIQLTEE QRRRLLEAKR
110 120 130 140 150
RQIISYIARN AIDPTTGRPI PEARIEAALE EVRFPINLWR DAESQAVEAV
160 170 180 190 200
RLIARVMPIR LARALLEVKI PPPHSGRAYQ ALMRMGEVKK ADWLPDGSLK
210 220 230
AELEIPAGAQ VEVTSRIQAL ARGAAEVKVK KVA
Length:233
Mass (Da):26,587
Last modified:June 26, 2007 - v2
Checksum:iE5EA37E748625612
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000002 Genomic DNA. Translation: BAA80152.2.
PIRiB72587.

Genome annotation databases

EnsemblBacteriaiBAA80152; BAA80152; APE_1167.1.
KEGGiape:APE_1167.1.
PATRICifig|272557.25.peg.801.

Similar proteinsi

Entry informationi

Entry nameiSDO1_AERPE
AccessioniPrimary (citable) accession number: Q9YCU5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: June 26, 2007
Last modified: October 25, 2017
This is version 90 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families