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Protein
Submitted name:

Repair endonuclease XPF

Gene

APE_1436.1

Organism
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi46MagnesiumCombined sources1
Metal bindingi56MagnesiumCombined sources1
Metal bindingi57Magnesium; via carbonyl oxygenCombined sources1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonucleaseImported, Hydrolase, Nuclease
LigandMagnesiumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciAPER272557:GJD6-972-MONOMER
BRENDAi3.1.99.B2 171

Names & Taxonomyi

Protein namesi
Submitted name:
Repair endonuclease XPFImported
Gene namesi
Ordered Locus Names:APE_1436.1Imported
OrganismiAeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)Imported
Taxonomic identifieri272557 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeAeropyrum
Proteomesi
  • UP000002518 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272557.APE_1436.1

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BGWX-ray2.80A/B10-223[»]
2BHNX-ray3.20A/B/C/D12-225[»]
ProteinModelPortaliQ9YC15
SMRiQ9YC15
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9YC15

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 94ERCC4InterPro annotationAdd BLAST81
Domaini166 – 185HhH1InterPro annotationAdd BLAST20
Domaini198 – 217HhH1InterPro annotationAdd BLAST20

Phylogenomic databases

eggNOGiarCOG04206 Archaea
COG1948 LUCA
HOGENOMiHOG000104951
KOiK10848
OMAiIIEGDLW
OrthoDBiPOG093Z0BUN

Family and domain databases

InterProiView protein in InterPro
IPR006166 ERCC4_domain
IPR003583 Hlx-hairpin-Hlx_DNA-bd_motif
IPR011335 Restrct_endonuc-II-like
IPR010994 RuvA_2-like
PfamiView protein in Pfam
PF02732 ERCC4, 1 hit
SMARTiView protein in SMART
SM00891 ERCC4, 1 hit
SM00278 HhH1, 2 hits
SUPFAMiSSF47781 SSF47781, 1 hit
SSF52980 SSF52980, 1 hit

Sequencei

Sequence statusi: Complete.

Q9YC15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGGRYRRGG FRPRVYVDVR EERSPVPSIL ESLGVQVIPK QLPMGDYLVS
60 70 80 90 100
DSIIVERKTS SDFAKSLFDG RLFEQASRLA EHYETVFIIV EGPPVPRRYR
110 120 130 140 150
GRERSLYAAM AALQLDYGIR LMNTMDPKGT ALVIESLARL STREGGQRIV
160 170 180 190 200
IHKKPRLSDV REWQLYILQS FPGIGRRTAE RILERFGSLE RFFTASKAEI
210 220 230 240
SKVEGIGEKR AEEIKKILMT PYKRSTGGGR RHASLDDFYR GEGEAGSG
Length:248
Mass (Da):28,114
Last modified:November 14, 2006 - v2
Checksum:i4BDF9DD52DBA6AD7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000002 Genomic DNA Translation: BAA80433.2
PIRiC72622

Genome annotation databases

EnsemblBacteriaiBAA80433; BAA80433; APE_1436.1
KEGGiape:APE_1436.1
PATRICifig|272557.25.peg.968

Similar proteinsi

Entry informationi

Entry nameiQ9YC15_AERPE
AccessioniPrimary (citable) accession number: Q9YC15
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 14, 2006
Last modified: February 28, 2018
This is version 116 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported