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Protein

Probable Brix domain-containing ribosomal biogenesis protein

Gene

APE_1443.1

Organism
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Probably involved in the biogenesis of the ribosome.UniRule annotation

GO - Biological processi

Keywordsi

Biological processRibosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Probable Brix domain-containing ribosomal biogenesis proteinUniRule annotation
Gene namesi
Ordered Locus Names:APE_1443.1
OrganismiAeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Taxonomic identifieri272557 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeAeropyrum
Proteomesi
  • UP000002518 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001202661 – 180Probable Brix domain-containing ribosomal biogenesis proteinAdd BLAST180

Interactioni

Protein-protein interaction databases

STRINGi272557.APE_1443.1.

Structurei

Secondary structure

1180
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi1 – 6Combined sources6
Helixi9 – 19Combined sources11
Beta strandi25 – 27Combined sources3
Helixi35 – 44Combined sources10
Beta strandi47 – 56Combined sources10
Beta strandi59 – 67Combined sources9
Beta strandi70 – 72Combined sources3
Beta strandi75 – 86Combined sources12
Helixi88 – 91Combined sources4
Beta strandi103 – 112Combined sources10
Helixi114 – 125Combined sources12
Beta strandi128 – 130Combined sources3
Beta strandi133 – 135Combined sources3
Beta strandi137 – 146Combined sources10
Beta strandi149 – 155Combined sources7
Beta strandi157 – 168Combined sources12
Beta strandi171 – 174Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2CXHX-ray1.80A2-180[»]
ProteinModelPortaliQ9YC08.
SMRiQ9YC08.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9YC08.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 178BrixUniRule annotationAdd BLAST178

Phylogenomic databases

eggNOGiarCOG03247. Archaea.
COG2136. LUCA.
KOiK14561.
OrthoDBiPOG093Z0HOE.

Family and domain databases

HAMAPiMF_00699. BriX. 1 hit.
InterProiView protein in InterPro
IPR036621. Anticodon-bd_dom_sf.
IPR007109. Brix.
IPR023548. Brix_dom_Rbsml_bgen_prot.
SMARTiView protein in SMART
SM00879. Brix. 1 hit.
SUPFAMiSSF52954. SSF52954. 1 hit.
PROSITEiView protein in PROSITE
PS50833. BRIX. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9YC08-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTSRRPSPR IRSFVKDLSA TIPGAFRFTR GHYSMEELAR EAIIRGADRI
60 70 80 90 100
VVVGERRGNP GIIRVYAVEG PERPDNIVSF IVKGVSLSRE RRWGLPSLRG
110 120 130 140 150
GEVLVARPLD SGVAVEFADA FVIAFHARLK PPEAAGYVEA VIESLDARTV
160 170 180
AVTFRYGGAP VGPMLRLGKP AEMVKRGRRV
Length:180
Mass (Da):19,752
Last modified:June 26, 2007 - v2
Checksum:i609E8E54B7379B7F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000002 Genomic DNA. Translation: BAA80440.2.
PIRiB72623.

Genome annotation databases

EnsemblBacteriaiBAA80440; BAA80440; APE_1443.1.
KEGGiape:APE_1443.1.

Entry informationi

Entry nameiBRIX_AERPE
AccessioniPrimary (citable) accession number: Q9YC08
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: June 26, 2007
Last modified: October 25, 2017
This is version 89 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references