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Q9Y6T7

- DGKB_HUMAN

UniProt

Q9Y6T7 - DGKB_HUMAN

Protein

Diacylglycerol kinase beta

Gene

DGKB

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 130 (01 Oct 2014)
      Sequence version 2 (11 Jan 2001)
      Previous versions | rss
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    Functioni

    Exhibits high phosphorylation activity for long-chain diacylglycerols.By similarity

    Catalytic activityi

    ATP + 1,2-diacyl-sn-glycerol = ADP + 1,2-diacyl-sn-glycerol 3-phosphate.

    Enzyme regulationi

    Stimulated by phosphatidylserine.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Calcium bindingi162 – 173121PROSITE-ProRule annotationAdd
    BLAST
    Calcium bindingi207 – 218122PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri244 – 29451Phorbol-ester/DAG-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri309 – 35850Phorbol-ester/DAG-type 2PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. calcium ion binding Source: InterPro
    3. diacylglycerol kinase activity Source: UniProtKB-EC
    4. NAD+ kinase activity Source: InterPro

    GO - Biological processi

    1. blood coagulation Source: Reactome
    2. intracellular signal transduction Source: InterPro
    3. platelet activation Source: Reactome
    4. protein kinase C-activating G-protein coupled receptor signaling pathway Source: InterPro

    Keywords - Molecular functioni

    Kinase, Transferase

    Keywords - Ligandi

    ATP-binding, Calcium, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_2202. Effects of PIP2 hydrolysis.
    SABIO-RKQ9Y6T7.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Diacylglycerol kinase beta (EC:2.7.1.107)
    Short name:
    DAG kinase beta
    Alternative name(s):
    90 kDa diacylglycerol kinase
    Diglyceride kinase beta
    Short name:
    DGK-beta
    Gene namesi
    Name:DGKB
    Synonyms:DAGK2, KIAA0718
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 7

    Organism-specific databases

    HGNCiHGNC:2850. DGKB.

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. plasma membrane Source: Reactome

    Keywords - Cellular componenti

    Cytoplasm

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA27311.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 804804Diacylglycerol kinase betaPRO_0000218457Add
    BLAST

    Proteomic databases

    MaxQBiQ9Y6T7.
    PaxDbiQ9Y6T7.
    PRIDEiQ9Y6T7.

    PTM databases

    PhosphoSiteiQ9Y6T7.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9Y6T7.
    BgeeiQ9Y6T7.
    GenevestigatoriQ9Y6T7.

    Interactioni

    Protein-protein interaction databases

    BioGridi107977. 2 interactions.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9Y6T7.
    SMRiQ9Y6T7. Positions 10-222, 245-286.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini149 – 18436EF-hand 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini194 – 22936EF-hand 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini434 – 568135DAGKcPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 DAGKc domain.PROSITE-ProRule annotation
    Contains 2 EF-hand domains.PROSITE-ProRule annotation
    Contains 2 phorbol-ester/DAG-type zinc fingers.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri244 – 29451Phorbol-ester/DAG-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri309 – 35850Phorbol-ester/DAG-type 2PROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Repeat, Zinc-finger

    Phylogenomic databases

    eggNOGiNOG47311.
    HOVERGENiHBG051345.
    InParanoidiQ9Y6T7.
    KOiK00901.
    OMAiCIEKANL.
    OrthoDBiEOG75XGK8.
    PhylomeDBiQ9Y6T7.
    TreeFamiTF313104.

    Family and domain databases

    Gene3Di1.10.238.10. 1 hit.
    1.10.238.110. 1 hit.
    InterProiIPR016064. ATP-NAD_kinase_PpnK-typ.
    IPR029477. DAG_kinase_typeI_N.
    IPR000756. Diacylglycerol_kin_accessory.
    IPR001206. Diacylglycerol_kinase_cat_dom.
    IPR011992. EF-hand-dom_pair.
    IPR018247. EF_Hand_1_Ca_BS.
    IPR002048. EF_hand_dom.
    IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
    [Graphical view]
    PfamiPF00130. C1_1. 2 hits.
    PF14513. DAG_kinase_N. 1 hit.
    PF00609. DAGK_acc. 1 hit.
    PF00781. DAGK_cat. 1 hit.
    PF13499. EF-hand_7. 1 hit.
    [Graphical view]
    SMARTiSM00109. C1. 2 hits.
    SM00045. DAGKa. 1 hit.
    SM00046. DAGKc. 1 hit.
    SM00054. EFh. 2 hits.
    [Graphical view]
    SUPFAMiSSF111331. SSF111331. 2 hits.
    PROSITEiPS50146. DAGK. 1 hit.
    PS00018. EF_HAND_1. 2 hits.
    PS50222. EF_HAND_2. 2 hits.
    PS00479. ZF_DAG_PE_1. 2 hits.
    PS50081. ZF_DAG_PE_2. 2 hits.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q9Y6T7-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MTNQEKWAHL SPSEFSQLQK YAEYSTKKLK DVLEEFHGNG VLAKYNPEGK    50
    QDILNQTIDF EGFKLFMKTF LEAELPDDFT AHLFMSFSNK FPHSSPMVKS 100
    KPALLSGGLR MNKGAITPPR TTSPANTCSP EVIHLKDIVC YLSLLERGRP 150
    EDKLEFMFRL YDTDGNGFLD SSELENIISQ MMHVAEYLEW DVTELNPILH 200
    EMMEEIDYDH DGTVSLEEWI QGGMTTIPLL VLLGLENNVK DDGQHVWRLK 250
    HFNKPAYCNL CLNMLIGVGK QGLCCSFCKY TVHERCVARA PPSCIKTYVK 300
    SKRNTDVMHH YWVEGNCPTK CDKCHKTVKC YQGLTGLHCV WCQITLHNKC 350
    ASHLKPECDC GPLKDHILPP TTICPVVLQT LPTSGVSVPE ERQSTVKKEK 400
    SGSQQPNKVI DKNKMQRANS VTVDGQGLQV TPVPGTHPLL VFVNPKSGGK 450
    QGERIYRKFQ YLLNPRQVYS LSGNGPMPGL NFFRDVPDFR VLACGGDGTV 500
    GWVLDCIEKA NVGKHPPVAI LPLGTGNDLA RCLRWGGGYE GENLMKILKD 550
    IENSTEIMLD RWKFEVIPND KDEKGDPVPY SIINNYFSIG VDASIAHRFH 600
    IMREKHPEKF NSRMKNKFWY FEFGTSETFS ATCKKLHESV EIECDGVQID 650
    LINISLEGIA ILNIPSMHGG SNLWGESKKR RSHRRIEKKG SDKRTTVTDA 700
    KELKFASQDL SDQLLEVVGL EGAMEMGQIY TGLKSAGRRL AQCSCVVIRT 750
    SKSLPMQIDG EPWMQTPCTI KITHKNQAPM LMGPPPKTGL FCSLVKRTRN 800
    RSKE 804
    Length:804
    Mass (Da):90,595
    Last modified:January 11, 2001 - v2
    Checksum:iCBCABD2339BFE176
    GO
    Isoform 2 (identifier: Q9Y6T7-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         770-773: IKIT → VSTE
         774-804: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:773
    Mass (Da):87,051
    Checksum:i9AF7118E642F8EB8
    GO

    Sequence cautioni

    The sequence AAS07533.1 differs from that shown. Reason: Erroneous gene model prediction.

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti789 – 7891G → S.
    Corresponds to variant rs34616903 [ dbSNP | Ensembl ].
    VAR_048858

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei770 – 7734IKIT → VSTE in isoform 2. 1 PublicationVSP_021898
    Alternative sequencei774 – 80431Missing in isoform 2. 1 PublicationVSP_021899Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AX032742 mRNA. Translation: CAC09945.1.
    AC005039 Genomic DNA. Translation: AAS07495.1.
    AC005248 Genomic DNA. Translation: AAC25525.1.
    AC006150 Genomic DNA. No translation available.
    AC011229 Genomic DNA. Translation: AAP21868.1.
    AC073258 Genomic DNA. Translation: AAS07533.1. Sequence problems.
    AC105459 Genomic DNA. Translation: AAP22362.1.
    CH236948 Genomic DNA. Translation: EAL24292.1.
    CH236948 Genomic DNA. Translation: EAL24293.1.
    CH471073 Genomic DNA. Translation: EAW93663.1.
    CH471073 Genomic DNA. Translation: EAW93664.1.
    BC105005 mRNA. Translation: AAI05006.1.
    AB018261 mRNA. Translation: BAA34438.1.
    CCDSiCCDS47547.1. [Q9Y6T7-1]
    CCDS47548.1. [Q9Y6T7-2]
    RefSeqiNP_004071.1. NM_004080.2. [Q9Y6T7-1]
    NP_663733.1. NM_145695.2. [Q9Y6T7-2]
    XP_005249685.1. XM_005249628.1. [Q9Y6T7-1]
    UniGeneiHs.567255.

    Genome annotation databases

    EnsembliENST00000399322; ENSP00000382260; ENSG00000136267. [Q9Y6T7-1]
    ENST00000403951; ENSP00000385780; ENSG00000136267. [Q9Y6T7-1]
    ENST00000406247; ENSP00000386066; ENSG00000136267. [Q9Y6T7-2]
    GeneIDi1607.
    KEGGihsa:1607.
    UCSCiuc003ssz.3. human. [Q9Y6T7-1]
    uc003sta.3. human. [Q9Y6T7-2]

    Polymorphism databases

    DMDMi12643960.

    Keywords - Coding sequence diversityi

    Alternative splicing, Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AX032742 mRNA. Translation: CAC09945.1 .
    AC005039 Genomic DNA. Translation: AAS07495.1 .
    AC005248 Genomic DNA. Translation: AAC25525.1 .
    AC006150 Genomic DNA. No translation available.
    AC011229 Genomic DNA. Translation: AAP21868.1 .
    AC073258 Genomic DNA. Translation: AAS07533.1 . Sequence problems.
    AC105459 Genomic DNA. Translation: AAP22362.1 .
    CH236948 Genomic DNA. Translation: EAL24292.1 .
    CH236948 Genomic DNA. Translation: EAL24293.1 .
    CH471073 Genomic DNA. Translation: EAW93663.1 .
    CH471073 Genomic DNA. Translation: EAW93664.1 .
    BC105005 mRNA. Translation: AAI05006.1 .
    AB018261 mRNA. Translation: BAA34438.1 .
    CCDSi CCDS47547.1. [Q9Y6T7-1 ]
    CCDS47548.1. [Q9Y6T7-2 ]
    RefSeqi NP_004071.1. NM_004080.2. [Q9Y6T7-1 ]
    NP_663733.1. NM_145695.2. [Q9Y6T7-2 ]
    XP_005249685.1. XM_005249628.1. [Q9Y6T7-1 ]
    UniGenei Hs.567255.

    3D structure databases

    ProteinModelPortali Q9Y6T7.
    SMRi Q9Y6T7. Positions 10-222, 245-286.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 107977. 2 interactions.

    Chemistry

    DrugBanki DB00144. Phosphatidylserine.

    PTM databases

    PhosphoSitei Q9Y6T7.

    Polymorphism databases

    DMDMi 12643960.

    Proteomic databases

    MaxQBi Q9Y6T7.
    PaxDbi Q9Y6T7.
    PRIDEi Q9Y6T7.

    Protocols and materials databases

    DNASUi 1607.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000399322 ; ENSP00000382260 ; ENSG00000136267 . [Q9Y6T7-1 ]
    ENST00000403951 ; ENSP00000385780 ; ENSG00000136267 . [Q9Y6T7-1 ]
    ENST00000406247 ; ENSP00000386066 ; ENSG00000136267 . [Q9Y6T7-2 ]
    GeneIDi 1607.
    KEGGi hsa:1607.
    UCSCi uc003ssz.3. human. [Q9Y6T7-1 ]
    uc003sta.3. human. [Q9Y6T7-2 ]

    Organism-specific databases

    CTDi 1607.
    GeneCardsi GC07M014153.
    HGNCi HGNC:2850. DGKB.
    MIMi 604070. gene.
    neXtProti NX_Q9Y6T7.
    PharmGKBi PA27311.
    HUGEi Search...
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG47311.
    HOVERGENi HBG051345.
    InParanoidi Q9Y6T7.
    KOi K00901.
    OMAi CIEKANL.
    OrthoDBi EOG75XGK8.
    PhylomeDBi Q9Y6T7.
    TreeFami TF313104.

    Enzyme and pathway databases

    Reactomei REACT_2202. Effects of PIP2 hydrolysis.
    SABIO-RK Q9Y6T7.

    Miscellaneous databases

    ChiTaRSi Dgkb. human.
    GeneWikii DGKB.
    GenomeRNAii 1607.
    NextBioi 6600.
    PROi Q9Y6T7.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q9Y6T7.
    Bgeei Q9Y6T7.
    Genevestigatori Q9Y6T7.

    Family and domain databases

    Gene3Di 1.10.238.10. 1 hit.
    1.10.238.110. 1 hit.
    InterProi IPR016064. ATP-NAD_kinase_PpnK-typ.
    IPR029477. DAG_kinase_typeI_N.
    IPR000756. Diacylglycerol_kin_accessory.
    IPR001206. Diacylglycerol_kinase_cat_dom.
    IPR011992. EF-hand-dom_pair.
    IPR018247. EF_Hand_1_Ca_BS.
    IPR002048. EF_hand_dom.
    IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
    [Graphical view ]
    Pfami PF00130. C1_1. 2 hits.
    PF14513. DAG_kinase_N. 1 hit.
    PF00609. DAGK_acc. 1 hit.
    PF00781. DAGK_cat. 1 hit.
    PF13499. EF-hand_7. 1 hit.
    [Graphical view ]
    SMARTi SM00109. C1. 2 hits.
    SM00045. DAGKa. 1 hit.
    SM00046. DAGKc. 1 hit.
    SM00054. EFh. 2 hits.
    [Graphical view ]
    SUPFAMi SSF111331. SSF111331. 2 hits.
    PROSITEi PS50146. DAGK. 1 hit.
    PS00018. EF_HAND_1. 2 hits.
    PS50222. EF_HAND_2. 2 hits.
    PS00479. ZF_DAG_PE_1. 2 hits.
    PS50081. ZF_DAG_PE_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "The DNA sequence of human chromosome 7."
      Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
      , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
      Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    4. "Human chromosome 7: DNA sequence and biology."
      Scherer S.W., Cheung J., MacDonald J.R., Osborne L.R., Nakabayashi K., Herbrick J.-A., Carson A.R., Parker-Katiraee L., Skaug J., Khaja R., Zhang J., Hudek A.K., Li M., Haddad M., Duggan G.E., Fernandez B.A., Kanematsu E., Gentles S.
      , Christopoulos C.C., Choufani S., Kwasnicka D., Zheng X.H., Lai Z., Nusskern D.R., Zhang Q., Gu Z., Lu F., Zeesman S., Nowaczyk M.J., Teshima I., Chitayat D., Shuman C., Weksberg R., Zackai E.H., Grebe T.A., Cox S.R., Kirkpatrick S.J., Rahman N., Friedman J.M., Heng H.H.Q., Pelicci P.G., Lo-Coco F., Belloni E., Shaffer L.G., Pober B., Morton C.C., Gusella J.F., Bruns G.A.P., Korf B.R., Quade B.J., Ligon A.H., Ferguson H., Higgins A.W., Leach N.T., Herrick S.R., Lemyre E., Farra C.G., Kim H.-G., Summers A.M., Gripp K.W., Roberts W., Szatmari P., Winsor E.J.T., Grzeschik K.-H., Teebi A., Minassian B.A., Kere J., Armengol L., Pujana M.A., Estivill X., Wilson M.D., Koop B.F., Tosi S., Moore G.E., Boright A.P., Zlotorynski E., Kerem B., Kroisel P.M., Petek E., Oscier D.G., Mould S.J., Doehner H., Doehner K., Rommens J.M., Vincent J.B., Venter J.C., Li P.W., Mural R.J., Adams M.D., Tsui L.-C.
      Science 300:767-772(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Tissue: Brain.
    6. "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
      Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
      DNA Res. 5:277-286(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 63-804 (ISOFORM 1).
      Tissue: Brain.

    Entry informationi

    Entry nameiDGKB_HUMAN
    AccessioniPrimary (citable) accession number: Q9Y6T7
    Secondary accession number(s): A4D116
    , A4D117, A8MXU2, O75241, Q2M377, Q75MF9, Q75MU7, Q86UI5, Q86UM9, Q9UQ29
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 11, 2001
    Last sequence update: January 11, 2001
    Last modified: October 1, 2014
    This is version 130 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 7
      Human chromosome 7: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    5. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3