Q9Y6R1 (S4A4_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 102.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Electrogenic sodium bicarbonate cotransporter 1 Short name=Sodium bicarbonate cotransporter Alternative name(s): Na(+)/HCO3(-) cotransporter Solute carrier family 4 member 4 kNBC1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1079 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Electrogenic sodium/bicarbonate cotransporter with a Na+:HCO3- stoichiometry varying from 1:2 to 1:3. May regulate bicarbonate influx/efflux at the basolateral membrane of cells and regulate intracellular pH. Ref.1 Ref.2 Ref.3 Ref.4 |
| Enzyme regulation | Inhibited by stilbene derivatives and regulated by cyclic AMP. |
| Subunit structure | Interacts with CA2/carbonic anhydrase 2 and CA4/carbonic anhydrase 4 which may regulate transporter activity. Ref.12 Ref.16 Ref.20 Ref.21 |
| Subcellular location | Basolateral cell membrane; Multi-pass membrane protein Ref.4 Ref.19. |
| Tissue specificity | Isoform 1 is expressed in pancreas and to a lower extent in heart, skeletal muscle, liver, parotid salivary glands, prostate, colon, stomach, thyroid, brain and spinal chord. Corneal endothelium cells express only isoform 1 (at protein level). Isoform 2 is specifically expressed in kidney at the level of proximal tubules. Ref.1 Ref.2 Ref.3 Ref.4 Ref.11 Ref.14 Ref.18 |
| Post-translational modification | Phosphorylation of Ser-1026 by PKA increases the binding of CA2 and changes the Na+:HCO3- stoichiometry of the transporter from 3:1 to 2:1. Phosphorylation of Thr-49 regulates isoform 1 conductance. N-glycosylation is not necessary for the transporter basic functions. |
| Involvement in disease | Renal tubular acidosis, proximal, with ocular abnormalities and mental retardation (pRTA-OA) [MIM:604278]: An extremely rare autosomal recessive syndrome characterized by short stature, profound proximal renal tubular acidosis, mental retardation, bilateral glaucoma, cataracts and bandkeratopathy. pRTA is due to a failure of the proximal tubular cells to reabsorb filtered bicarbonate from the urine, leading to urinary bicarbonate wasting and subsequent acidemia. Loss of interaction with and stimulation by CA4 is the cause of retinitis pigmentosa type 17 (RP17). |
| Sequence similarities | Belongs to the anion exchanger (TC 2.A.31) family. [View classification] |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ion transport Sodium transport Symport Transport |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing |
| Disease | Disease mutation Retinitis pigmentosa |
| Domain | Transmembrane Transmembrane helix |
| Ligand | Sodium |
| PTM | Glycoprotein Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Cellular_component | basolateral plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell integral to plasma membraneTraceable author statement Ref.1. Source: ProtInc |
| Molecular_function | inorganic anion exchanger activity Inferred from electronic annotation. Source: InterPro sodium:bicarbonate symporter activityTraceable author statement Ref.2. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9Y6R1-1) Also known as: hcNBC; hhNBC; hNBC1; pNBC; pNCB1; pNBC-1; NBC1b; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9Y6R1-2) Also known as: hkNBC; hkNBCe1; kNBC; kNBC1; kNBC-1; NBC1a; The sequence of this isoform differs from the canonical sequence as follows: 1-44: Missing. 45-85: HKRKTGHKEK...SSSSILKPLI → MSTENVEGKP...FNHSIFTSAV | ||||||
| Isoform 3 (identifier: Q9Y6R1-3) The sequence of this isoform differs from the canonical sequence as follows: 1-44: Missing. 45-85: HKRKTGHKEK...SSSSILKPLI → MSTENVEGKP...FNHSIFTSAV 635-690: ANISISNDTT...LVGNNCNFVP → GEGITLCVYA...EFDVSLPEVF 691-1079: Missing. | ||||||
| Isoform 4 (identifier: Q9Y6R1-4) The sequence of this isoform differs from the canonical sequence as follows: 813-896: Missing. | ||||||
| Isoform 5 (identifier: Q9Y6R1-5) The sequence of this isoform differs from the canonical sequence as follows: 1034-1079: SDCPYSEKVP...PTFLERHTSC → EKDHQHSLNA...WRSKGTETTL |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1079 | 1079 | Electrogenic sodium bicarbonate cotransporter 1 | PRO_0000079227 | |||||
Regions | |||||||||
| Topological domain | 1 – 468 | 468 | Cytoplasmic Potential | ||||||
| Transmembrane | 469 – 488 | 20 | Helical; Potential | ||||||
| Topological domain | 489 – 504 | 16 | Extracellular Potential | ||||||
| Transmembrane | 505 – 526 | 22 | Helical; Potential | ||||||
| Topological domain | 527 – 554 | 28 | Cytoplasmic Potential | ||||||
| Transmembrane | 555 – 580 | 26 | Helical; Potential | ||||||
| Topological domain | 581 – 691 | 111 | Extracellular Potential | ||||||
| Transmembrane | 692 – 710 | 19 | Helical; Potential | ||||||
| Topological domain | 711 – 725 | 15 | Cytoplasmic Potential | ||||||
| Transmembrane | 726 – 748 | 23 | Helical; Potential | ||||||
| Topological domain | 749 – 777 | 29 | Extracellular Potential | ||||||
| Transmembrane | 778 – 797 | 20 | Helical; Potential | ||||||
| Topological domain | 798 – 822 | 25 | Cytoplasmic Potential | ||||||
| Transmembrane | 823 – 847 | 25 | Helical; Potential | ||||||
| Topological domain | 848 – 881 | 34 | Extracellular Potential | ||||||
| Transmembrane | 882 – 901 | 20 | Helical; Potential | ||||||
| Topological domain | 902 – 949 | 48 | Cytoplasmic Potential | ||||||
| Transmembrane | 950 – 967 | 18 | Helical; Potential | ||||||
| Topological domain | 968 – 970 | 3 | Extracellular Potential | ||||||
| Transmembrane | 971 – 986 | 16 | Helical; Potential | ||||||
| Topological domain | 987 – 1079 | 93 | Cytoplasmic Potential | ||||||
| Region | 748 – 779 | 32 | Interaction with CA4 | ||||||
| Region | 1002 – 1004 | 3 | CA2-binding | ||||||
| Region | 1030 – 1033 | 4 | CA2-binding | ||||||
| Region | 1057 – 1059 | 3 | Required for basolateral targeting | ||||||
| Compositional bias | 1009 – 1024 | 16 | Lys-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 30 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 49 | 1 | Phosphothreonine; by PKA Ref.17 | ||||||
| Modified residue | 254 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 255 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 257 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 262 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1026 | 1 | Phosphoserine; by PKA Ref.9 | ||||||
| Modified residue | 1029 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1034 | 1 | Phosphoserine By similarity | ||||||
| Glycosylation | 641 | 1 | N-linked (GlcNAc...) By similarity | ||||||
| Glycosylation | 661 | 1 | N-linked (GlcNAc...) By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 44 | 44 | Missing in isoform 2 and isoform 3. | VSP_016704 | |||||
| Alternative sequence | 45 – 85 | 41 | HKRKT…LKPLI → MSTENVEGKPSNLGERGRAR SSTFLRVVQPMFNHSIFTSA V in isoform 2 and isoform 3. | VSP_016705 | |||||
| Alternative sequence | 635 – 690 | 56 | ANISI…CNFVP → GEGITLCVYARFVFGGRCRL HACKFSTCCHGPQELVLFFS LKNSATEFDVSLPEVF in isoform 3. | VSP_016706 | |||||
| Alternative sequence | 691 – 1079 | 389 | Missing in isoform 3. | VSP_016707 | |||||
| Alternative sequence | 813 – 896 | 84 | Missing in isoform 4. | VSP_016708 | |||||
| Alternative sequence | 1034 – 1079 | 46 | SDCPY…RHTSC → EKDHQHSLNATHHADKIPFL QSLGMPSPPRTPVKVVPQIR IELEPEDNDYFWRSKGTETT L in isoform 5. | VSP_041003 | |||||
| Natural variant | 342 | 1 | R → S in pRTA-OA; mistargeting and altered function. Ref.23 Ref.25 Ref.26 | VAR_024751 | |||||
| Natural variant | 471 | 1 | S → L in pRTA-OA; mistargeting to the apical membrane and altered function. Ref.24 Ref.25 | VAR_024752 | |||||
| Natural variant | 529 | 1 | T → S in pRTA-OA; mistargeting and altered function. Ref.26 | VAR_024753 | |||||
| Natural variant | 554 | 1 | R → H in pRTA-OA; mistargeting and altered function. Ref.23 Ref.25 Ref.26 | VAR_024754 | |||||
| Natural variant | 843 | 1 | A → V in pRTA-OA; altered function. Ref.26 | VAR_024755 | |||||
| Natural variant | 925 | 1 | R → C in pRTA-OA; altered function. Ref.26 | VAR_024756 | |||||
Experimental info | |||||||||
| Mutagenesis | 49 | 1 | T → A: Loss of conductance regulation by cAMP; isoform 1. Ref.17 | ||||||
| Mutagenesis | 49 | 1 | T → D: Loss of conductance regulation by cAMP; isoform 1. Ref.17 | ||||||
| Mutagenesis | 135 | 1 | E → R: Mistargeting and altered function. Ref.25 | ||||||
| Mutagenesis | 477 | 1 | Y → F: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 493 | 1 | D → N: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 494 | 1 | A → K: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 503 | 1 | E → Q: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 504 | 1 | S → L: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 536 | 1 | E → Q: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 552 | 1 | E → N: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 554 | 1 | R → D: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 582 | 1 | R → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 582 | 1 | R → Q: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 586 | 1 | E → Q: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 599 | 1 | D → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 600 | 1 | A → T: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 602 | 1 | K → Q: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 603 | 1 | K → Q: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 691 | 1 | D → R: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 700 | 1 | F → M: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 711 | 1 | K → E, N or Q: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 711 | 1 | K → R: No effect on the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 712 | 1 | K → N: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 714 | 1 | K → Q: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 715 | 1 | T → N: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 721 | 1 | T → G: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 724 | 1 | R → E: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 725 | 1 | K → N: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 728 | 1 | S → G: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 729 | 1 | D → N or R: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 743 | 1 | D → K or N: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 749 | 1 | D → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 752 | 1 | K → Q: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 766 | 1 | R → Q: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 767 | 1 | G → T: Alters interaction with CA4. Ref.16 | ||||||
| Mutagenesis | 775 | 1 | E → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 798 | 1 | D → E, N or R: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 808 – 809 | 2 | RK → NN: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 814 – 815 | 2 | KK → NN: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 820 | 1 | H → D, N, S or R: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 822 | 1 | D → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 851 | 1 | H → N: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 853 | 1 | D → N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 858 – 860 | 3 | ETE → MSK: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 875 – 877 | 3 | EQR → QQQ: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 875 | 1 | E → Q: Strong reduction of the sodium-dependent ion transport activity. | ||||||
| Mutagenesis | 898 | 1 | K → E: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 925 – 927 | 3 | RLK → NLN: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 948 | 1 | R → E: Strong reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 949 | 1 | R → E: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 951 | 1 | H → D: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 951 | 1 | H → N or R: Prevents membrane targeting. Ref.22 | ||||||
| Mutagenesis | 968 | 1 | K → Q: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 987 | 1 | R → E or N: Moderate reduction of the sodium-dependent ion transport activity. Ref.22 | ||||||
| Mutagenesis | 1002 | 1 | L → N: Partial loss of interaction with CA2. | ||||||
| Mutagenesis | 1003 | 1 | D → N: Abolishes interaction with CA2. | ||||||
| Mutagenesis | 1004 | 1 | D → N: Partial loss of interaction with CA2. | ||||||
| Mutagenesis | 1026 | 1 | S → A: Prevents phosphorylation by PKA. Loss of regulation by cAMP of the transporter stoichiometry. Ref.9 Ref.17 | ||||||
| Mutagenesis | 1026 | 1 | S → D: Loss of regulation by cAMP of the transporter stoichiometry. Shifts transporter stoichiometry from 3:1 to 2:1. Ref.9 Ref.17 | ||||||
| Mutagenesis | 1030 – 1033 | 4 | DNDD → NNNN: Abolishes interaction with CA2. Ref.12 Ref.20 | ||||||
| Mutagenesis | 1030 | 1 | D → N: Loss of regulation by cAMP of the transporter stoichiometry. Abolishes interaction with CA2. Ref.12 | ||||||
| Mutagenesis | 1032 | 1 | D → N: Loss of regulation by cAMP of the transporter stoichiometry. Partial loss of interaction with CA2. Ref.12 | ||||||
| Mutagenesis | 1033 | 1 | D → N: No effect on regulation by cAMP of the transporter stoichiometry. Partial loss of interaction with CA2. Ref.12 | ||||||
| Mutagenesis | 1057 | 1 | F → A: Targeting to apical membrane. Ref.19 | ||||||
| Sequence conflict | 6 | 1 | V → A in AAG47773. Ref.4 | ||||||
| Sequence conflict | 49 | 1 | T → A in BAH58226. Ref.6 | ||||||
| Sequence conflict | 78 | 1 | S → G in AAF21718. Ref.3 | ||||||
| Sequence conflict | 256 | 1 | S → F in AAD42020. Ref.3 | ||||||
| Sequence conflict | 263 | 1 | D → E in AAF21718. Ref.3 | ||||||
| Sequence conflict | 298 | 1 | P → H in BAH58226. Ref.6 | ||||||
| Sequence conflict | 364 | 1 | H → R in AAF21719. Ref.3 | ||||||
| Sequence conflict | 605 | 1 | I → V in AAF21718. Ref.3 | ||||||
| Sequence conflict | 654 | 1 | S → P in AAF21718. Ref.3 | ||||||
| Sequence conflict | 749 | 1 | D → G in AAF21719. Ref.3 | ||||||
| Sequence conflict | 799 | 1 | Q → R in AAG47773. Ref.4 | ||||||
| Sequence conflict | 856 | 1 | K → R in AAG47773. Ref.4 | ||||||
| Sequence conflict | 912 | 1 | M → R in AAF21718. Ref.3 | ||||||
| Sequence conflict | 913 | 1 | G → R in AAF21719. Ref.3 | ||||||
| Sequence conflict | 940 | 1 | I → V in AAF21718. Ref.3 | ||||||
| Sequence conflict | 1007 | 1 | P → S in AAF21719. Ref.3 | ||||||
| Sequence conflict | 1069 | 1 | S → P in AAF21719. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and functional expression of a human kidney Na+:HCO3-cotransporter." Burnham C.E., Amlal H., Wang Z., Shull G.E., Soleimani M. J. Biol. Chem. 272:19111-19114(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), FUNCTION, TISSUE SPECIFICITY. Tissue: Kidney. |
| [2] | "Molecular cloning, chromosomal localization, tissue distribution, and functional expression of the human pancreatic sodium bicarbonate cotransporter." Abuladze N., Lee I., Newman D., Hwang J., Boorer K., Pushkin A., Kurtz I. J. Biol. Chem. 273:17689-17695(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY. Tissue: Pancreas. |
| [3] | "Cloning and characterization of a human electrogenic Na+-HCO-3 cotransporter isoform (hhNBC)." Choi I., Romero M.F., Khandoudi N., Bril A., Boron W.F. Am. J. Physiol. 276:C576-C584(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY. Tissue: Heart, Kidney and Prostate. |
| [4] | "Identification and cloning of the Na/HCO3- cotransporter (NBC) in human corneal endothelium." Sun X.C., Bonanno J.A. Exp. Eye Res. 77:287-295(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION IN CORNEAL ENDOTHELIAL CELLS, TISSUE SPECIFICITY, SUBCELLULAR LOCATION. Tissue: Corneal endothelium. |
| [5] | "Homo sapiens sodium bicarbonate cotransporter NBC1 splice variant." Pushkin A., Abuladze N., Kurtz I. Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4). Tissue: Skeletal muscle. |
| [6] | "cDNA cloning and characterization of human sodium bicarbonate cotransporter, bNBC, a brain type splicing variant of SLC4A4 gene." Yamada H., Nagayoshi A., Kuroda Y., Mizutani A., Ando H., Seki G., Mikoshiba K. Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5). |
| [7] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Kidney. |
| [9] | "Phosphorylation of Ser(982) in the sodium bicarbonate cotransporter kNBC1 shifts the HCO(3)(-):Na(+) stoichiometry from 3:1 to 2:1 in murine proximal tubule cells." Gross E., Hawkins K., Pushkin A., Sassani P., Dukkipati R., Abuladze N., Hopfer U., Kurtz I. J. Physiol. (Lond.) 537:659-665(2001) [PubMed] [Europe PMC] [Abstract] Cited for: REGULATION, MUTAGENESIS OF SER-1026, PHOSPHORYLATION AT SER-1026. |
| [10] | Erratum Gross E., Hawkins K., Pushkin A., Sassani P., Dukkipati R., Abuladze N., Hopfer U., Kurtz I. J. Physiol. (Lond.) 538:1003-1003(2002) |
| [11] | "Expression of a sodium bicarbonate cotransporter in human parotid salivary glands." Park K., Hurley P.T., Roussa E., Cooper G.J., Smith C.P., Thevenod F., Steward M.C., Case R.M. Arch. Oral Biol. 47:1-9(2002) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [12] | "Regulation of the sodium bicarbonate cotransporter kNBC1 function: role of Asp(986), Asp(988) and kNBC1-carbonic anhydrase II binding." Gross E., Pushkin A., Abuladze N., Fedotoff O., Kurtz I. J. Physiol. (Lond.) 544:679-685(2002) [PubMed] [Europe PMC] [Abstract] Cited for: REGULATION, MUTAGENESIS OF ASP-1030; ASP-1032 AND ASP-1033, INTERACTION WITH CA2. |
| [13] | "Role of glycosylation in the renal electrogenic Na+-HCO3-cotransporter (NBCe1)." Choi I., Hu L., Rojas J.D., Schmitt B.M., Boron W.F. Am. J. Physiol. 284:F1199-F1206(2003) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION. |
| [14] | "Localization of NBC-1 variants in human kidney and renal cell carcinoma." Yamada H., Yamazaki S., Moriyama N., Hara C., Horita S., Enomoto Y., Kudo A., Kawakami H., Tanaka Y., Fujita T., Seki G. Biochem. Biophys. Res. Commun. 310:1213-1218(2003) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [15] | "Identification of membrane topography of the electrogenic sodium bicarbonate cotransporter pNBC1 by in vitro transcription/translation." Tatishchev S., Abuladze N., Pushkin A., Newman D., Liu W., Weeks D., Sachs G., Kurtz I. Biochemistry 42:755-765(2003) [PubMed] [Europe PMC] [Abstract] Cited for: TOPOLOGY. |
| [16] | "Direct extracellular interaction between carbonic anhydrase IV and the human NBC1 sodium/bicarbonate co-transporter." Alvarez B.V., Loiselle F.B., Supuran C.T., Schwartz G.J., Casey J.R. Biochemistry 42:12321-12329(2003) [PubMed] [Europe PMC] [Abstract] Cited for: REGULATION, INTERACTION WITH CA2 AND CA4, MUTAGENESIS OF GLY-767. |
| [17] | "Phosphorylation-induced modulation of pNBC1 function: distinct roles for the amino- and carboxy-termini." Gross E., Fedotoff O., Pushkin A., Abuladze N., Newman D., Kurtz I. J. Physiol. (Lond.) 549:673-682(2003) [PubMed] [Europe PMC] [Abstract] Cited for: REGULATION, MUTAGENESIS OF THR-49 AND SER-1026, PHOSPHORYLATION AT THR-49. |
| [18] | "Expression of Na+/HCO3- co-transporter proteins (NBCs) in rat and human skeletal muscle." Kristensen J.M., Kristensen M., Juel C. Acta Physiol. Scand. 182:69-76(2004) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [19] | "Identification of a carboxyl-terminal motif essential for the targeting of Na+-HCO-3 cotransporter NBC1 to the basolateral membrane." Li H.C., Worrell R.T., Matthews J.B., Husseinzadeh H., Neumeier L., Petrovic S., Conforti L., Soleimani M. J. Biol. Chem. 279:43190-43197(2004) [PubMed] [Europe PMC] [Abstract] Cited for: MUTAGENESIS OF PHE-1057, SUBCELLULAR LOCATION. |
| [20] | "Molecular mechanism of kNBC1-carbonic anhydrase II interaction in proximal tubule cells." Pushkin A., Abuladze N., Gross E., Newman D., Tatishchev S., Lee I., Fedotoff O., Bondar G., Azimov R., Ngyuen M., Kurtz I. J. Physiol. (Lond.) 559:55-65(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CA2, MUTAGENESIS OF 1002-LEU--ASN-1004 AND 1030-ASP--ASP-1033. |
| [21] | "Mutant carbonic anhydrase 4 impairs pH regulation and causes retinal photoreceptor degeneration." Yang Z., Alvarez B.V., Chakarova C., Jiang L., Karan G., Frederick J.M., Zhao Y., Sauve Y., Li X., Zrenner E., Wissinger B., Den Hollander A.I., Katz B., Baehr W., Cremers F.P., Casey J.R., Bhattacharya S.S., Zhang K. Hum. Mol. Genet. 14:255-265(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CA4. |
| [22] | "Critical amino acid residues involved in the electrogenic sodium-bicarbonate cotransporter kNBC1-mediated transport." Abuladze N., Azimov R., Newman D., Sassani P., Liu W., Tatishchev S., Pushkin A., Kurtz I. J. Physiol. (Lond.) 565:717-730(2005) [PubMed] [Europe PMC] [Abstract] Cited for: MUTAGENESIS OF TYR-477; ASP-493; ALA-494; GLU-503; SER-504; GLU-536; GLU-552; ARG-554; ARG-582; GLU-586; ASP-599; ALA-600; LYS-602; LYS-603; ASP-691; PHE-700; LYS-711; LYS-712; LYS-714; THR-715; THR-721; ARG-724; LYS-725; SER-728; ASP-729; ASP-743; ASP-749; LYS-752; ARG-766; GLU-775; ASP-798; 808-ARG--LYS-809; 814-LYS--LYS-815; HIS-820; ASP-822; HIS-851; ASP-853; 858-GLU--GLU-860; 875-GLU--ARG-877; LYS-898; 925-ARG--LYS-927; ARG-948; ARG-949; HIS-951; LYS-968 AND ARG-987. |
| [23] | "Mutations in SLC4A4 cause permanent isolated proximal renal tubular acidosis with ocular abnormalities." Igarashi T., Inatomi J., Sekine T., Cha S.H., Kanai Y., Kunimi M., Tsukamoto K., Satoh H., Shimadzu M., Tozawa F., Mori T., Shiobara M., Seki G., Endou H. Nat. Genet. 23:264-266(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PRTA-OA SER-342 AND HIS-554. |
| [24] | "A novel missense mutation in the sodium bicarbonate cotransporter (NBCe1/SLC4A4) causes proximal tubular acidosis and glaucoma through ion transport defects." Dinour D., Chang M.-H., Satoh J., Smith B.L., Angle N., Knecht A., Serban I., Holtzman E.J., Romero M.F. J. Biol. Chem. 279:52238-52246(2004) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT PRTA-OA LEU-471. |
| [25] | "Missense mutations in Na+:HCO3- cotransporter NBC1 show abnormal trafficking in polarized kidney cells: a basis of proximal renal tubular acidosis." Li H.C., Szigligeti P., Worrell R.T., Matthews J.B., Conforti L., Soleimani M. Am. J. Physiol. 289:F61-F71(2005) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PRTA-OA SER-342; LEU-471 AND HIS-554, MUTAGENESIS OF GLU-135. |
| [26] | "Functional analysis of NBC1 mutants associated with proximal renal tubular acidosis and ocular abnormalities." Horita S., Yamada H., Inatomi J., Moriyama N., Sekine T., Igarashi T., Endo Y., Dasouki M., Ekim M., Al-Gazali L., Shimadzu M., Seki G., Fujita T. J. Am. Soc. Nephrol. 16:2270-2278(2005) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS PRTA-OA SER-342; SER-529; HIS-554; VAL-843 AND CYS-925. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF007216 mRNA. Translation: AAC51645.1. AF011390 mRNA. Translation: AAC39840.1. AF053753 mRNA. Translation: AAF21718.1. AF053754 mRNA. Translation: AAF21719.1. AF069510 mRNA. Translation: AAD42020.1. AF310248 mRNA. Translation: AAG47773.1. AF157492 mRNA. Translation: AAF80343.1. AB470072 mRNA. Translation: BAH58226.1. AC019089 Genomic DNA. No translation available. AC079230 Genomic DNA. No translation available. AC096713 Genomic DNA. No translation available. AC110783 Genomic DNA. No translation available. AC112226 Genomic DNA. No translation available. BC030977 mRNA. Translation: AAH30977.1. |
| IPI | IPI00016949. IPI00410270. IPI00411338. IPI00658166. IPI00913897. |
| RefSeq | NP_001091954.1. NM_001098484.2. NP_003750.1. NM_003759.3. |
| UniGene | Hs.5462. |
3D structure databases | |
| ProteinModelPortal | Q9Y6R1. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-59373N. |
| IntAct | Q9Y6R1. 2 interactions. |
| STRING | 9606.ENSP00000393557. |
PTM databases | |
| PhosphoSite | Q9Y6R1. |
Polymorphism databases | |
| DMDM | 74721543. |
Proteomic databases | |
| PaxDb | Q9Y6R1. |
| PRIDE | Q9Y6R1. |
Protocols and materials databases | |
| DNASU | 8671. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000264485; ENSP00000264485; ENSG00000080493. ENST00000340595; ENSP00000344272; ENSG00000080493. ENST00000351898; ENSP00000307349; ENSG00000080493. ENST00000425175; ENSP00000393557; ENSG00000080493. ENST00000512686; ENSP00000422400; ENSG00000080493. |
| GeneID | 8671. |
| KEGG | hsa:8671. |
| UCSC | uc003hfy.3. human. uc003hga.2. human. uc003hgc.4. human. uc010iib.3. human. |
Organism-specific databases | |
| CTD | 8671. |
| GeneCards | GC04P072017. |
| HGNC | HGNC:11030. SLC4A4. |
| HPA | CAB022493. |
| MIM | 603345. gene. 604278. phenotype. |
| neXtProt | NX_Q9Y6R1. |
| Orphanet | 93607. Proximal renal tubular acidosis with ocular abnormalities and intellectual deficit. |
| PharmGKB | PA35898. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG251607. |
| HOVERGEN | HBG004326. |
| InParanoid | Q9Y6R1. |
| KO | K13575. |
| OMA | DIMEQQP. |
| OrthoDB | EOG4320XB. |
| PhylomeDB | Q9Y6R1. |
Enzyme and pathway databases | |
| Reactome | REACT_15518. Transmembrane transport of small molecules. |
Gene expression databases | |
| ArrayExpress | Q9Y6R1. |
| Bgee | Q9Y6R1. |
| CleanEx | HS_SLC4A4. |
| Genevestigator | Q9Y6R1. |
| GermOnline | ENSG00000080493. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.40.1100.10. 1 hit. |
| InterPro | IPR013769. Band3_cytoplasmic_dom. IPR011531. HCO3_transpt_C. IPR003020. HCO3_transpt_euk. IPR003024. Na/HCO3_transpt. IPR016152. PTrfase/Anion_transptr. [Graphical view] |
| PANTHER | PTHR11453. PTHR11453. 1 hit. |
| Pfam | PF07565. Band_3_cyto. 1 hit. PF00955. HCO3_cotransp. 1 hit. [Graphical view] |
| PRINTS | PR01231. HCO3TRNSPORT. PR01232. NAHCO3TRSPRT. |
| SUPFAM | SSF55804. PTrfase/Anion_transptr. 1 hit. |
| TIGRFAMs | TIGR00834. ae. 1 hit. |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SLC4A4. human. |
| GenomeRNAi | 8671. |
| NextBio | 32523. |
| SOURCE | Search... |
Entry information
| Entry name | S4A4_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9Y6R1 Secondary accession number(s): C4B714 Q9UP50 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
