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Protein

EMILIN-1

Gene

EMILIN1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

May be responsible for anchoring smooth muscle cells to elastic fibers, and may be involved not only in the formation of the elastic fiber, but also in the processes that regulate vessel assembly. Has cell adhesive capacity.

GO - Molecular functioni

GO - Biological processi

  • cell adhesion Source: ProtInc
Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Enzyme and pathway databases

BioCyciZFISH:ENSG00000138080-MONOMER.
ReactomeiR-HSA-2129379. Molecules associated with elastic fibres.

Names & Taxonomyi

Protein namesi
Recommended name:
EMILIN-1
Alternative name(s):
Elastin microfibril interface-located protein 1
Short name:
Elastin microfibril interfacer 1
Gene namesi
Name:EMILIN1
Synonyms:EMI
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:19880. EMILIN1.

Subcellular locationi

GO - Cellular componenti

  • collagen trimer Source: UniProtKB-KW
  • extracellular exosome Source: UniProtKB
  • extracellular matrix Source: UniProtKB
  • extracellular region Source: Reactome
  • proteinaceous extracellular matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Extracellular matrix, Secreted

Pathology & Biotechi

Organism-specific databases

DisGeNETi11117.
PharmGKBiPA134922135.

Polymorphism and mutation databases

BioMutaiEMILIN1.
DMDMi205371751.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000000781522 – 1016EMILIN-1Add BLAST995

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi60 ↔ 121PROSITE-ProRule annotation
Disulfide bondi85 ↔ 92PROSITE-ProRule annotation
Disulfide bondi120 ↔ 129PROSITE-ProRule annotation
Glycosylationi154N-linked (GlcNAc...)Sequence analysis1
Glycosylationi415N-linked (GlcNAc...)1 Publication1
Glycosylationi455N-linked (GlcNAc...)2 Publications1
Glycosylationi561N-linked (GlcNAc...)Sequence analysis1
Glycosylationi658N-linked (GlcNAc...)Sequence analysis1
Glycosylationi766N-linked (GlcNAc...)1 Publication1
Glycosylationi794N-linked (GlcNAc...)1 Publication1

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

EPDiQ9Y6C2.
PaxDbiQ9Y6C2.
PeptideAtlasiQ9Y6C2.
PRIDEiQ9Y6C2.

2D gel databases

REPRODUCTION-2DPAGEQ9Y6C2.

PTM databases

iPTMnetiQ9Y6C2.
PhosphoSitePlusiQ9Y6C2.

Expressioni

Tissue specificityi

Distributed in tissues where resilience and elastic recoil are prominent. Highest levels in the adult small intestine, aorta, lung, uterus, and appendix and in the fetal spleen, kidney, lung, and heart; intermediate expression was detected in adult liver, ovary, colon, stomach, lymph node and spleen; adult heart, bladder, prostate, adrenal gland, mammary gland, placenta and kidney showed low expression whereas a series of other adult tissues, including skeletal muscle and different regions of adult brain show no expression.1 Publication

Gene expression databases

BgeeiENSG00000138080.
CleanExiHS_EMILIN1.

Organism-specific databases

HPAiHPA002822.

Interactioni

Subunit structurei

Homotrimer associated through a moderately stable interaction of the C-terminal globular C1q domains, allowing the nucleation of the triple helix and then a further quaternary assembly to higher-order polymers via intermolecular disulfide bonds. Interacts with EMILIN2.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
itself4EBI-744586,EBI-744586
BEX3Q009943EBI-744586,EBI-741753
BEX5Q5H9J73EBI-744586,EBI-10243741
CTAGE5O153203EBI-744586,EBI-1050253
IFT20Q8IY316EBI-744586,EBI-744203
LAIR2Q6ISS43EBI-744586,EBI-10250491
MTMR9Q96QG78EBI-744586,EBI-744593
NMIQ8WTW23EBI-744586,EBI-10174268
PLAC9Q5JTB65EBI-744586,EBI-3923605
RIBC1Q8N4433EBI-744586,EBI-10265323
TAX1BP1Q86VP13EBI-744586,EBI-529518
ZC2HC1CQ53FD03EBI-744586,EBI-740767

Protein-protein interaction databases

BioGridi116292. 53 interactors.
DIPiDIP-35733N.
IntActiQ9Y6C2. 32 interactors.
MINTiMINT-133181.
STRINGi9606.ENSP00000369677.

Structurei

Secondary structure

11016
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi872 – 876Combined sources5
Beta strandi884 – 886Combined sources3
Beta strandi891 – 897Combined sources7
Turni902 – 905Combined sources4
Beta strandi906 – 908Combined sources3
Beta strandi913 – 919Combined sources7
Beta strandi929 – 933Combined sources5
Turni935 – 937Combined sources3
Beta strandi942 – 946Combined sources5
Beta strandi972 – 974Combined sources3
Beta strandi982 – 986Combined sources5
Beta strandi1002 – 1009Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2KA3NMR-A/B/C867-1016[»]
2OIINMR-A/B/C867-1016[»]
ProteinModelPortaliQ9Y6C2.
SMRiQ9Y6C2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9Y6C2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini56 – 131EMIPROSITE-ProRule annotationAdd BLAST76
Domaini814 – 864Collagen-likeAdd BLAST51
Domaini866 – 1013C1qPROSITE-ProRule annotationAdd BLAST148

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili216 – 256Sequence analysisAdd BLAST41
Coiled coili356 – 420Sequence analysisAdd BLAST65
Coiled coili576 – 603Sequence analysisAdd BLAST28
Coiled coili685 – 752Sequence analysisAdd BLAST68
Coiled coili835 – 857Sequence analysisAdd BLAST23

Sequence similaritiesi

Contains 1 C1q domain.PROSITE-ProRule annotation
Contains 1 collagen-like domain.Curated
Contains 1 EMI domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Collagen, Signal

Phylogenomic databases

eggNOGiENOG410IKJ2. Eukaryota.
ENOG4111F2M. LUCA.
HOGENOMiHOG000112364.
HOVERGENiHBG051473.
InParanoidiQ9Y6C2.
PhylomeDBiQ9Y6C2.
TreeFamiTF331033.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR011489. EMI_domain.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
PF07546. EMI. 1 hit.
[Graphical view]
SMARTiSM00110. C1Q. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
PS51041. EMI. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9Y6C2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAPRTLWSCY LCCLLTAAAG AASYPPRGFS LYTGSSGALS PGGPQAQIAP
60 70 80 90 100
RPASRHRNWC AYVVTRTVSC VLEDGVETYV KYQPCAWGQP QCPQSIMYRR
110 120 130 140 150
FLRPRYRVAY KTVTDMEWRC CQGYGGDDCA ESPAPALGPA SSTPRPLAQP
160 170 180 190 200
ARPNLSGSSA GSPLSGLGGE GPGESEKVQQ LEEQVQSLTK ELQGLRGVLQ
210 220 230 240 250
GLSGRLAEDV QRAVETAFNG RQQPADAAAR PGVHETLNEI QHQLQLLDTR
260 270 280 290 300
VSTHDQELGH LNNHHGGSSS SGGSRAPAPA SAPPGPSEEL LRQLEQRLQE
310 320 330 340 350
SCSVCLAGLD GFRRQQQEDR ERLRAMEKLL ASVEERQRHL AGLAVGRRPP
360 370 380 390 400
QECCSPELGR RLAELERRLD VVAGSVTVLS GRRGTELGGA AGQGGHPPGY
410 420 430 440 450
TSLASRLSRL EDRFNSTLGP SEEQEESWPG APGGLSHWLP AARGRLEQLG
460 470 480 490 500
GLLANVSGEL GGRLDLLEEQ VAGAMQACGQ LCSGAPGEQD SQVSEILSAL
510 520 530 540 550
ERRVLDSEGQ LRLVGSGLHT VEAAGEARQA TLEGLQEVVG RLQDRVDAQD
560 570 580 590 600
ETAAEFTLRL NLTAARLGQL EGLLQAHGDE GCGACGGVQE ELGRLRDGVE
610 620 630 640 650
RCSCPLLPPR GPGAGPGVGG PSRGPLDGFS VFGGSSGSAL QALQGELSEV
660 670 680 690 700
ILSFSSLNDS LNELQTTVEG QGADLADLGA TKDRIISEIN RLQQEATEHA
710 720 730 740 750
TESEERFRGL EEGQAQAGQC PSLEGRLGRL EGVCERLDTV AGGLQGLREG
760 770 780 790 800
LSRHVAGLWA GLRETNTTSQ MQAALLEKLV GGQAGLGRRL GALNSSLQLL
810 820 830 840 850
EDRLHQLSLK DLTGPAGEAG PPGPPGLQGP PGPAGPPGSP GKDGQEGPIG
860 870 880 890 900
PPGPQGEQGV EGAPAAPVPQ VAFSAALSLP RSEPGTVPFD RVLLNDGGYY
910 920 930 940 950
DPETGVFTAP LAGRYLLSAV LTGHRHEKVE AVLSRSNQGV ARVDSGGYEP
960 970 980 990 1000
EGLENKPVAE SQPSPGTLGV FSLILPLQAG DTVCVDLVMG QLAHSEEPLT
1010
IFSGALLYGD PELEHA
Length:1,016
Mass (Da):106,667
Last modified:September 2, 2008 - v2
Checksum:iA447F74E17DBCBA8
GO
Isoform 2 (identifier: Q9Y6C2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-674: Missing.
     675-675: L → M
     813-813: T → TGEGTK

Note: No experimental confirmation available.
Show »
Length:347
Mass (Da):35,928
Checksum:i1AFAB73C44E6F09C
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_046095149Q → R.5 PublicationsCorresponds to variant rs2736976dbSNPEnsembl.1
Natural variantiVAR_046096536Q → R.Corresponds to variant rs36069611dbSNPEnsembl.1
Natural variantiVAR_046097903E → K.Corresponds to variant rs36045790dbSNPEnsembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0554781 – 674Missing in isoform 2. CuratedAdd BLAST674
Alternative sequenceiVSP_055479675L → M in isoform 2. Curated1
Alternative sequenceiVSP_055480813T → TGEGTK in isoform 2. Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF088916 mRNA. Translation: AAD42161.1.
AF162780 Genomic DNA. Translation: AAF25006.1.
AC013403 Genomic DNA. Translation: AAX93166.1.
CH471053 Genomic DNA. Translation: EAX00645.1.
BC007530 mRNA. Translation: AAH07530.1.
BC009947 mRNA. Translation: AAH09947.2.
BC136279 mRNA. Translation: AAI36280.1.
BC142688 mRNA. Translation: AAI42689.1.
AL050138 mRNA. Translation: CAB43287.2.
CCDSiCCDS1733.1. [Q9Y6C2-1]
PIRiT08772.
RefSeqiNP_008977.1. NM_007046.3.
UniGeneiHs.63348.

Genome annotation databases

EnsembliENST00000613734; ENSP00000481146; ENSG00000138080.
GeneIDi11117.
KEGGihsa:11117.
UCSCiuc002rii.5. human. [Q9Y6C2-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF088916 mRNA. Translation: AAD42161.1.
AF162780 Genomic DNA. Translation: AAF25006.1.
AC013403 Genomic DNA. Translation: AAX93166.1.
CH471053 Genomic DNA. Translation: EAX00645.1.
BC007530 mRNA. Translation: AAH07530.1.
BC009947 mRNA. Translation: AAH09947.2.
BC136279 mRNA. Translation: AAI36280.1.
BC142688 mRNA. Translation: AAI42689.1.
AL050138 mRNA. Translation: CAB43287.2.
CCDSiCCDS1733.1. [Q9Y6C2-1]
PIRiT08772.
RefSeqiNP_008977.1. NM_007046.3.
UniGeneiHs.63348.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2KA3NMR-A/B/C867-1016[»]
2OIINMR-A/B/C867-1016[»]
ProteinModelPortaliQ9Y6C2.
SMRiQ9Y6C2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi116292. 53 interactors.
DIPiDIP-35733N.
IntActiQ9Y6C2. 32 interactors.
MINTiMINT-133181.
STRINGi9606.ENSP00000369677.

PTM databases

iPTMnetiQ9Y6C2.
PhosphoSitePlusiQ9Y6C2.

Polymorphism and mutation databases

BioMutaiEMILIN1.
DMDMi205371751.

2D gel databases

REPRODUCTION-2DPAGEQ9Y6C2.

Proteomic databases

EPDiQ9Y6C2.
PaxDbiQ9Y6C2.
PeptideAtlasiQ9Y6C2.
PRIDEiQ9Y6C2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000613734; ENSP00000481146; ENSG00000138080.
GeneIDi11117.
KEGGihsa:11117.
UCSCiuc002rii.5. human. [Q9Y6C2-1]

Organism-specific databases

CTDi11117.
DisGeNETi11117.
GeneCardsiEMILIN1.
HGNCiHGNC:19880. EMILIN1.
HPAiHPA002822.
MIMi130660. gene.
neXtProtiNX_Q9Y6C2.
PharmGKBiPA134922135.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IKJ2. Eukaryota.
ENOG4111F2M. LUCA.
HOGENOMiHOG000112364.
HOVERGENiHBG051473.
InParanoidiQ9Y6C2.
PhylomeDBiQ9Y6C2.
TreeFamiTF331033.

Enzyme and pathway databases

BioCyciZFISH:ENSG00000138080-MONOMER.
ReactomeiR-HSA-2129379. Molecules associated with elastic fibres.

Miscellaneous databases

ChiTaRSiEMILIN1. human.
EvolutionaryTraceiQ9Y6C2.
GeneWikiiEMILIN1.
GenomeRNAii11117.
PROiQ9Y6C2.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000138080.
CleanExiHS_EMILIN1.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR011489. EMI_domain.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
PF07546. EMI. 1 hit.
[Graphical view]
SMARTiSM00110. C1Q. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
PS51041. EMI. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiEMIL1_HUMAN
AccessioniPrimary (citable) accession number: Q9Y6C2
Secondary accession number(s): A5PL03
, H0Y7A0, Q53SY9, Q96G58, Q96IH6, Q9UG76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2003
Last sequence update: September 2, 2008
Last modified: November 30, 2016
This is version 143 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Miscellaneous

Its deposition precedes the appearance of elastin and is simultaneous with that of fibrillin 1.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.