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Protein

Protocadherin gamma-A6

Gene

PCDHGA6

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Keywords - Ligandi

Calcium

Names & Taxonomyi

Protein namesi
Recommended name:
Protocadherin gamma-A6
Short name:
PCDH-gamma-A6
Gene namesi
Name:PCDHGA6
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:8704. PCDHGA6.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini30 – 692663ExtracellularSequence analysisAdd
BLAST
Transmembranei693 – 71321HelicalSequence analysisAdd
BLAST
Topological domaini714 – 932219CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA33052.

Polymorphism and mutation databases

BioMutaiPCDHGA6.
DMDMi37999837.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 932903Protocadherin gamma-A6PRO_0000003958Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi81 – 811N-linked (GlcNAc...)Sequence analysis
Glycosylationi419 – 4191N-linked (GlcNAc...)Sequence analysis
Glycosylationi545 – 5451N-linked (GlcNAc...)Sequence analysis
Glycosylationi685 – 6851N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ9Y5G7.
PaxDbiQ9Y5G7.
PRIDEiQ9Y5G7.

PTM databases

iPTMnetiQ9Y5G7.
PhosphoSiteiQ9Y5G7.

Expressioni

Gene expression databases

BgeeiQ9Y5G7.
GenevisibleiQ9Y5G7. HS.

Organism-specific databases

HPAiHPA008755.

Structurei

3D structure databases

ProteinModelPortaliQ9Y5G7.
SMRiQ9Y5G7. Positions 29-690.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini30 – 133104Cadherin 1PROSITE-ProRule annotationAdd
BLAST
Domaini134 – 242109Cadherin 2PROSITE-ProRule annotationAdd
BLAST
Domaini243 – 347105Cadherin 3PROSITE-ProRule annotationAdd
BLAST
Domaini348 – 452105Cadherin 4PROSITE-ProRule annotationAdd
BLAST
Domaini453 – 562110Cadherin 5PROSITE-ProRule annotationAdd
BLAST
Domaini570 – 682113Cadherin 6PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 6 cadherin domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOVERGENiHBG054878.
InParanoidiQ9Y5G7.
KOiK16495.
OMAiKLNLYPV.
OrthoDBiEOG7KSX80.
PhylomeDBiQ9Y5G7.
TreeFamiTF332299.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9Y5G7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAPPQRHPQR SEQVLLLTLL GTLWGAAAAQ IRYSIPEELE KGSFVGNIVK
60 70 80 90 100
DLGLEPQELA EHGVRIVSRG RMQLFSLNPR NGSLVTAGRI DREELCAQSP
110 120 130 140 150
RCLVSFNILV EDKLNLYPVE VEIVDINDNT PRFLKEELEV KILENAAPSS
160 170 180 190 200
RFPLMEVYDP DVGMNSLQGF KLSGNSHFSV DVQSEAHGPK YPELVLEGTL
210 220 230 240 250
DREGEAVYRL VLTAMDGGDP VRSSVAQILV TVLDVNDNTP MFTQPVYRVS
260 270 280 290 300
VPENLPVGTP VLAVTATDQD EGVHGEVTYS FVKITEKISQ IFCLNVLTGE
310 320 330 340 350
ISTSANLDYE DSSFYELGVE ARDGPGLRDR AKVLITILDV NDNVPEVVVT
360 370 380 390 400
SGSRTIAESA PPGTVIALFQ VFDRDSGLNG LVTCSIPRSL PFELEKSVGN
410 420 430 440 450
YYRLVTNAAL DREEVFLYNI TVTATDKGTP PLSTETIISL NVADTNDNPP
460 470 480 490 500
TFPHSSYSVY VLENNPRGAS IFSVNALDPD VDQNAQVSYS LAEDTLQGAP
510 520 530 540 550
LSSYVSINSD TGILYALRSF DYEQLRDLQL WVTASDSGDP PLSSNVSLSL
560 570 580 590 600
FVLDQNDNAP EILYPALPTD GSTGVELAPR SAEPGYLVTK VVAVDRDSGQ
610 620 630 640 650
NAWLSYRLLK ASEPGLFSVG LHTGEVRTAR ALLDRDALKQ SLVVAVQDHG
660 670 680 690 700
QPPLSATVTL TVAVADRIPD ILADLGSLEP SAKPNDSDLT LYLVVAVAAV
710 720 730 740 750
SCVFLAFVIV LLALRLQRWH KSRLLQASGG GLASMPGSHF VGVEGVRAFL
760 770 780 790 800
QTYSHEVSLT ADSRKSHLIF PQPNYADTLI NQESYEKSEP LLITQDLLET
810 820 830 840 850
KGEPRQLQQA PPNTDWRFSQ AQRPGTSGSQ NGDDTGTWPN NQFDTEMLQA
860 870 880 890 900
MILASASEAA DGSSTLGGGA GTMGLSARYG PQFTLQHVPD YRQNVYIPGS
910 920 930
NATLTNAAGK RDGKAPAGGN GNKKKSGKKE KK
Length:932
Mass (Da):100,871
Last modified:November 1, 1999 - v1
Checksum:i27035AFD1D9921C9
GO
Isoform 2 (identifier: Q9Y5G7-2) [UniParc]FASTAAdd to basket

Also known as: Short

The sequence of this isoform differs from the canonical sequence as follows:
     809-818: QAPPNTDWRF → VSFFPPKREE
     819-932: Missing.

Show »
Length:818
Mass (Da):89,163
Checksum:iA84AB142AD47BC5E
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti248 – 2481R → S.
Corresponds to variant rs11575953 [ dbSNP | Ensembl ].
VAR_048560

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei809 – 81810QAPPNTDWRF → VSFFPPKREE in isoform 2. 2 PublicationsVSP_008669
Alternative sequencei819 – 932114Missing in isoform 2. 2 PublicationsVSP_008670Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152326 mRNA. Translation: AAD43720.1.
AF152513 mRNA. Translation: AAD43773.1.
CH471062 Genomic DNA. Translation: EAW61931.1.
CH471062 Genomic DNA. Translation: EAW61929.1.
BC136702 mRNA. Translation: AAI36703.1.
BC136703 mRNA. Translation: AAI36704.1.
BC146651 mRNA. Translation: AAI46652.1.
CCDSiCCDS54926.1. [Q9Y5G7-1]
CCDS75335.1. [Q9Y5G7-2]
RefSeqiNP_061742.1. NM_018919.2. [Q9Y5G7-1]
NP_114475.1. NM_032086.1. [Q9Y5G7-2]
UniGeneiHs.368160.

Genome annotation databases

EnsembliENST00000517434; ENSP00000429601; ENSG00000253731. [Q9Y5G7-1]
ENST00000610583; ENSP00000479478; ENSG00000253731. [Q9Y5G7-2]
GeneIDi56109.
KEGGihsa:56109.
UCSCiuc003ljy.3. human. [Q9Y5G7-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152326 mRNA. Translation: AAD43720.1.
AF152513 mRNA. Translation: AAD43773.1.
CH471062 Genomic DNA. Translation: EAW61931.1.
CH471062 Genomic DNA. Translation: EAW61929.1.
BC136702 mRNA. Translation: AAI36703.1.
BC136703 mRNA. Translation: AAI36704.1.
BC146651 mRNA. Translation: AAI46652.1.
CCDSiCCDS54926.1. [Q9Y5G7-1]
CCDS75335.1. [Q9Y5G7-2]
RefSeqiNP_061742.1. NM_018919.2. [Q9Y5G7-1]
NP_114475.1. NM_032086.1. [Q9Y5G7-2]
UniGeneiHs.368160.

3D structure databases

ProteinModelPortaliQ9Y5G7.
SMRiQ9Y5G7. Positions 29-690.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiQ9Y5G7.
PhosphoSiteiQ9Y5G7.

Polymorphism and mutation databases

BioMutaiPCDHGA6.
DMDMi37999837.

Proteomic databases

MaxQBiQ9Y5G7.
PaxDbiQ9Y5G7.
PRIDEiQ9Y5G7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000517434; ENSP00000429601; ENSG00000253731. [Q9Y5G7-1]
ENST00000610583; ENSP00000479478; ENSG00000253731. [Q9Y5G7-2]
GeneIDi56109.
KEGGihsa:56109.
UCSCiuc003ljy.3. human. [Q9Y5G7-1]

Organism-specific databases

CTDi56109.
GeneCardsiPCDHGA6.
HGNCiHGNC:8704. PCDHGA6.
HPAiHPA008755.
MIMi604968. gene.
606293. gene.
neXtProtiNX_Q9Y5G7.
PharmGKBiPA33052.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOVERGENiHBG054878.
InParanoidiQ9Y5G7.
KOiK16495.
OMAiKLNLYPV.
OrthoDBiEOG7KSX80.
PhylomeDBiQ9Y5G7.
TreeFamiTF332299.

Miscellaneous databases

GenomeRNAii56109.
PROiQ9Y5G7.
SOURCEiSearch...

Gene expression databases

BgeeiQ9Y5G7.
GenevisibleiQ9Y5G7. HS.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A striking organization of a large family of human neural cadherin-like cell adhesion genes."
    Wu Q., Maniatis T.
    Cell 97:779-790(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
    Tissue: Brain.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Brain.

Entry informationi

Entry nameiPCDG6_HUMAN
AccessioniPrimary (citable) accession number: Q9Y5G7
Secondary accession number(s): A6H8K7, B2RN55, Q9Y5D1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: November 1, 1999
Last modified: June 8, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.