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Protein

Protocadherin gamma-A7

Gene

PCDHGA7

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Keywords - Ligandi

Calcium

Names & Taxonomyi

Protein namesi
Recommended name:
Protocadherin gamma-A7
Short name:
PCDH-gamma-A7
Gene namesi
Name:PCDHGA7
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:8705. PCDHGA7.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini29 – 692664ExtracellularSequence analysisAdd
BLAST
Transmembranei693 – 71321HelicalSequence analysisAdd
BLAST
Topological domaini714 – 932219CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA33053.

Polymorphism and mutation databases

BioMutaiPCDHGA7.
DMDMi37999836.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence analysisAdd
BLAST
Chaini29 – 932904Protocadherin gamma-A7PRO_0000003960Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi419 – 4191N-linked (GlcNAc...)Sequence analysis
Glycosylationi545 – 5451N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ9Y5G6.
PaxDbiQ9Y5G6.
PeptideAtlasiQ9Y5G6.
PRIDEiQ9Y5G6.

PTM databases

iPTMnetiQ9Y5G6.
PhosphoSiteiQ9Y5G6.

Expressioni

Gene expression databases

GenevisibleiQ9Y5G6. HS.

Organism-specific databases

HPAiHPA008755.

Interactioni

Protein-protein interaction databases

BioGridi121048. 3 interactions.
IntActiQ9Y5G6. 1 interaction.
MINTiMINT-7970044.

Structurei

3D structure databases

ProteinModelPortaliQ9Y5G6.
SMRiQ9Y5G6. Positions 31-691.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 133105Cadherin 1PROSITE-ProRule annotationAdd
BLAST
Domaini134 – 242109Cadherin 2PROSITE-ProRule annotationAdd
BLAST
Domaini243 – 347105Cadherin 3PROSITE-ProRule annotationAdd
BLAST
Domaini348 – 452105Cadherin 4PROSITE-ProRule annotationAdd
BLAST
Domaini453 – 562110Cadherin 5PROSITE-ProRule annotationAdd
BLAST
Domaini570 – 682113Cadherin 6PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 6 cadherin domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOGENOMiHOG000220892.
HOVERGENiHBG054878.
InParanoidiQ9Y5G6.
KOiK16495.
OMAiYRLMTAK.
OrthoDBiEOG091G024L.
PhylomeDBiQ9Y5G6.
TreeFamiTF332299.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 4 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9Y5G6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAQPRGGDY RGFFLLSILL GTPWEAWAGR ILYSVSEETD KGSFVGDIAK
60 70 80 90 100
DLGLEPRELA ERGVRIISRG RTQLFALNQR SGSLVTAGRI DREEICAQSA
110 120 130 140 150
RCLVNFNILM EDKMNLYPID VEIIDINDNV PRFLTEEINV KIMENTAPGV
160 170 180 190 200
RFPLSEAGDP DVGTNSLQSY QLSPNRHFSL AVQSGDDETK YPELVLERVL
210 220 230 240 250
DREEERVHHL VLTASDGGDP PRSSTAHIQV TVVDVNDHTP VFSLPQYQVT
260 270 280 290 300
VPENVPVGTR LLTVHAIDLD EGVNGEVTYS FRKITPKLPK MFHLNSLTGE
310 320 330 340 350
ISTLEGLDYE ETAFYEMEVQ AQDGPGSLTK AKVLITVLDV NDNAPEVTMT
360 370 380 390 400
SLSSSIPEDT PLGTVIALFY LQDRDSGKNG EVTCTIPENL PFKLEKSIDN
410 420 430 440 450
YYRLVTTKNL DRETLSLYNI TLKATDGGTP PLSRETHIFM QVADTNDNPP
460 470 480 490 500
TFPHSSYSVY IAENNPRGAS IFLVTAQDHD SEDNAQITYS LAEDTIQGAP
510 520 530 540 550
VSSYVSINSD TGVLYALQSF DYEQLRELQL RVTAHDSGDP PLSSNMSLSL
560 570 580 590 600
FVLDQNDNPP EILYPALPTD GSTGMELAPR SAEPGYLVTK VVAVDKDSGQ
610 620 630 640 650
NAWLSYLLLK ASEPGLFAVG LYTGEVRTAR ALLDRDALKQ SLVVAVQDHG
660 670 680 690 700
QPPLSATVTL TVAVADSIPE VLADLGSLEP SDGPYNYDLT LYLVVAVATV
710 720 730 740 750
SCVFLAFVLV LLALRLRRWH KSRLLQASEG GLANVPTSHF VGMDGVQAFL
760 770 780 790 800
QTYSHEVSLT ADSRKSHLIF PQPNYVDMLI SQESCEKNDS LLTSVDFQEC
810 820 830 840 850
KENLPSIQQA PPNTDWRFSQ AQRPGTSGSQ NGDDTGTWPN NQFDTEMLQA
860 870 880 890 900
MILASASEAA DGSSTLGGGA GTMGLSARYG PQFTLQHVPD YRQNVYIPGS
910 920 930
NATLTNAAGK RDGKAPAGGN GNKKKSGKKE KK
Length:932
Mass (Da):101,722
Last modified:November 1, 1999 - v1
Checksum:i9614AE69C0CA2371
GO
Isoform 2 (identifier: Q9Y5G6-2) [UniParc]FASTAAdd to basket
Also known as: Short

The sequence of this isoform differs from the canonical sequence as follows:
     809-817: QAPPNTDWR → VSPALPLFP
     818-932: Missing.

Show »
Length:817
Mass (Da):89,718
Checksum:i4B956F3AFB34F022
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti188 – 1881E → G.
Corresponds to variant rs2072315 [ dbSNP | Ensembl ].
VAR_048561
Natural varianti212 – 2121L → F.
Corresponds to variant rs2240698 [ dbSNP | Ensembl ].
VAR_048562
Natural varianti239 – 2391T → M.
Corresponds to variant rs17097251 [ dbSNP | Ensembl ].
VAR_048563

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei809 – 8179QAPPNTDWR → VSPALPLFP in isoform 2. 2 PublicationsVSP_008671
Alternative sequencei818 – 932115Missing in isoform 2. 2 PublicationsVSP_008672Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152327 mRNA. Translation: AAD43721.1.
AF152514 mRNA. Translation: AAD43774.1.
CH471062 Genomic DNA. Translation: EAW61943.1.
BC136747 mRNA. Translation: AAI36748.1.
BC136748 mRNA. Translation: AAI36749.1.
CCDSiCCDS54927.1. [Q9Y5G6-1]
CCDS75336.1. [Q9Y5G6-2]
RefSeqiNP_061743.1. NM_018920.3. [Q9Y5G6-1]
NP_114476.1. NM_032087.2. [Q9Y5G6-2]
UniGeneiHs.368160.

Genome annotation databases

EnsembliENST00000518325; ENSP00000430024; ENSG00000253537. [Q9Y5G6-1]
ENST00000617050; ENSP00000477805; ENSG00000253537. [Q9Y5G6-2]
GeneIDi56108.
KEGGihsa:56108.
UCSCiuc003ljz.3. human. [Q9Y5G6-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152327 mRNA. Translation: AAD43721.1.
AF152514 mRNA. Translation: AAD43774.1.
CH471062 Genomic DNA. Translation: EAW61943.1.
BC136747 mRNA. Translation: AAI36748.1.
BC136748 mRNA. Translation: AAI36749.1.
CCDSiCCDS54927.1. [Q9Y5G6-1]
CCDS75336.1. [Q9Y5G6-2]
RefSeqiNP_061743.1. NM_018920.3. [Q9Y5G6-1]
NP_114476.1. NM_032087.2. [Q9Y5G6-2]
UniGeneiHs.368160.

3D structure databases

ProteinModelPortaliQ9Y5G6.
SMRiQ9Y5G6. Positions 31-691.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi121048. 3 interactions.
IntActiQ9Y5G6. 1 interaction.
MINTiMINT-7970044.

PTM databases

iPTMnetiQ9Y5G6.
PhosphoSiteiQ9Y5G6.

Polymorphism and mutation databases

BioMutaiPCDHGA7.
DMDMi37999836.

Proteomic databases

MaxQBiQ9Y5G6.
PaxDbiQ9Y5G6.
PeptideAtlasiQ9Y5G6.
PRIDEiQ9Y5G6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000518325; ENSP00000430024; ENSG00000253537. [Q9Y5G6-1]
ENST00000617050; ENSP00000477805; ENSG00000253537. [Q9Y5G6-2]
GeneIDi56108.
KEGGihsa:56108.
UCSCiuc003ljz.3. human. [Q9Y5G6-1]

Organism-specific databases

CTDi56108.
GeneCardsiPCDHGA7.
HGNCiHGNC:8705. PCDHGA7.
HPAiHPA008755.
MIMi604968. gene.
606294. gene.
neXtProtiNX_Q9Y5G6.
PharmGKBiPA33053.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOGENOMiHOG000220892.
HOVERGENiHBG054878.
InParanoidiQ9Y5G6.
KOiK16495.
OMAiYRLMTAK.
OrthoDBiEOG091G024L.
PhylomeDBiQ9Y5G6.
TreeFamiTF332299.

Miscellaneous databases

GenomeRNAii56108.
PROiQ9Y5G6.
SOURCEiSearch...

Gene expression databases

GenevisibleiQ9Y5G6. HS.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 4 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPCDG7_HUMAN
AccessioniPrimary (citable) accession number: Q9Y5G6
Secondary accession number(s): B2RN87, Q9Y5D0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: November 1, 1999
Last modified: September 7, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.