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Protein

Protocadherin gamma-B7

Gene

PCDHGB7

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Keywords - Ligandi

Calcium

Names & Taxonomyi

Protein namesi
Recommended name:
Protocadherin gamma-B7
Short name:
PCDH-gamma-B7
Gene namesi
Name:PCDHGB7
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:8714. PCDHGB7.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini31 – 691ExtracellularSequence analysisAdd BLAST661
Transmembranei692 – 712HelicalSequence analysisAdd BLAST21
Topological domaini713 – 929CytoplasmicSequence analysisAdd BLAST217

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000254122.
PharmGKBiPA33062.

Polymorphism and mutation databases

BioMutaiPCDHGB7.
DMDMi37999828.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 30Sequence analysisAdd BLAST30
ChainiPRO_000000398331 – 929Protocadherin gamma-B7Add BLAST899

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi419N-linked (GlcNAc...)Sequence analysis1
Glycosylationi545N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

EPDiQ9Y5F8.
PaxDbiQ9Y5F8.
PeptideAtlasiQ9Y5F8.
PRIDEiQ9Y5F8.

PTM databases

iPTMnetiQ9Y5F8.
PhosphoSitePlusiQ9Y5F8.

Expressioni

Gene expression databases

BgeeiENSG00000254122.
GenevisibleiQ9Y5F8. HS.

Organism-specific databases

HPAiHPA008755.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000381594.

Structurei

3D structure databases

ProteinModelPortaliQ9Y5F8.
SMRiQ9Y5F8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 133Cadherin 1PROSITE-ProRule annotationAdd BLAST103
Domaini134 – 242Cadherin 2PROSITE-ProRule annotationAdd BLAST109
Domaini243 – 347Cadherin 3PROSITE-ProRule annotationAdd BLAST105
Domaini348 – 452Cadherin 4PROSITE-ProRule annotationAdd BLAST105
Domaini453 – 562Cadherin 5PROSITE-ProRule annotationAdd BLAST110
Domaini570 – 675Cadherin 6PROSITE-ProRule annotationAdd BLAST106

Sequence similaritiesi

Contains 6 cadherin domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOGENOMiHOG000220892.
HOVERGENiHBG054878.
InParanoidiQ9Y5F8.
KOiK16496.
OMAiLTSVDHC.
OrthoDBiEOG091G00SP.
PhylomeDBiQ9Y5F8.
TreeFamiTF332299.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9Y5F8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGGSCAQRRR AGPRQVLFPL LLPLFYPTLC EPIRYSIPEE LAKGSVVGNL
60 70 80 90 100
AKDLGLSVLD VSARELRVSA EKLHFSVDAQ SGDLLVKDRI DREQICKERR
110 120 130 140 150
RCELQLEAVV ENPLNIFHVI VVIEDVNDHA PQFRKDEINL EISESVSLGM
160 170 180 190 200
GTILESAEDP DISMNSLSKY QLSPNEYFSL VEKDNPDGGK YPELVLQKTL
210 220 230 240 250
DRETQSAHHL VLTALDGGDP PRSGTAQIRI LVIDANDNPP VFSQDVYRVS
260 270 280 290 300
LREDVPPGTS ILRVKATDQD EGINSEITYS FFGVADKAQH VFSLDYTTGN
310 320 330 340 350
ILTQQPLDFE EVERYTINIE AKDRGSLSTR CKVIVEVVDE NDNSPEIIIT
360 370 380 390 400
SLSDQIMEDS PPGVVVALFK TRDQDSGENG EVRCSLSRGV PFKIHSSSNN
410 420 430 440 450
YYKLVTDEAL DREQTPEYNV TIAATDRGKP PLSSSKTITL HITDVNDNAP
460 470 480 490 500
VFGQSAYLVH VPENNQPGAS IAQVSASDPD FGLNGRVSYS LIASDLESRT
510 520 530 540 550
LSSYVSVSAQ SGVVFAQRAF DHEQLRTFEL TLQARDQGSP ALSANVSLRV
560 570 580 590 600
LVGDRNDNAP RVLYPALGPD GSALFDTVPR AAQPGYLVTK VVAVDADSGH
610 620 630 640 650
NAWLSYHVVQ ASEPGLFSLG LRTGEVRMVR ALGDKDSVRQ RLLVAVRDGG
660 670 680 690 700
QPPLSATATL HLVFADSLQE VLPDFSDHPT PSDSQAEMQF YLVVALALIS
710 720 730 740 750
VLFLLAVILA IALRLRQSFS PTAGDCFESV LCSKSGPVGP PNYSEGTLPY
760 770 780 790 800
AYNFCVPGDQ MNPEFNFFTS VDHCPATQDN LNKDSMLLAS ILTPSVEADK
810 820 830 840 850
KILKQQAPPN TDWRFSQAQR PGTSGSQNGD DTGTWPNNQF DTEMLQAMIL
860 870 880 890 900
ASASEAADGS STLGGGAGTM GLSARYGPQF TLQHVPDYRQ NVYIPGSNAT
910 920
LTNAAGKRDG KAPAGGNGNK KKSGKKEKK
Length:929
Mass (Da):100,974
Last modified:November 1, 1999 - v1
Checksum:i2AFDD977CE501F59
GO
Isoform 2 (identifier: Q9Y5F8-2) [UniParc]FASTAAdd to basket
Also known as: Short

The sequence of this isoform differs from the canonical sequence as follows:
     806-808: QAP → VSI
     809-929: Missing.

Show »
Length:808
Mass (Da):88,347
Checksum:iC974AB1B432BE15D
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_048573405V → L.Corresponds to variant rs17208397dbSNPEnsembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_008696806 – 808QAP → VSI in isoform 2. 1 Publication3
Alternative sequenceiVSP_008697809 – 929Missing in isoform 2. 1 PublicationAdd BLAST121

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152336 mRNA. Translation: AAD43730.1.
AF152523 mRNA. Translation: AAD43783.1.
BC051788 mRNA. Translation: AAH51788.1.
CCDSiCCDS47293.1. [Q9Y5F8-1]
CCDS75344.1. [Q9Y5F8-2]
RefSeqiNP_061750.1. NM_018927.3. [Q9Y5F8-1]
NP_115272.1. NM_032101.2. [Q9Y5F8-2]
UniGeneiHs.368160.

Genome annotation databases

EnsembliENST00000398594; ENSP00000381594; ENSG00000254122. [Q9Y5F8-1]
ENST00000612073; ENSP00000479132; ENSG00000254122. [Q9Y5F8-2]
GeneIDi56099.
KEGGihsa:56099.
UCSCiuc003lkm.4. human. [Q9Y5F8-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF152336 mRNA. Translation: AAD43730.1.
AF152523 mRNA. Translation: AAD43783.1.
BC051788 mRNA. Translation: AAH51788.1.
CCDSiCCDS47293.1. [Q9Y5F8-1]
CCDS75344.1. [Q9Y5F8-2]
RefSeqiNP_061750.1. NM_018927.3. [Q9Y5F8-1]
NP_115272.1. NM_032101.2. [Q9Y5F8-2]
UniGeneiHs.368160.

3D structure databases

ProteinModelPortaliQ9Y5F8.
SMRiQ9Y5F8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000381594.

PTM databases

iPTMnetiQ9Y5F8.
PhosphoSitePlusiQ9Y5F8.

Polymorphism and mutation databases

BioMutaiPCDHGB7.
DMDMi37999828.

Proteomic databases

EPDiQ9Y5F8.
PaxDbiQ9Y5F8.
PeptideAtlasiQ9Y5F8.
PRIDEiQ9Y5F8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000398594; ENSP00000381594; ENSG00000254122. [Q9Y5F8-1]
ENST00000612073; ENSP00000479132; ENSG00000254122. [Q9Y5F8-2]
GeneIDi56099.
KEGGihsa:56099.
UCSCiuc003lkm.4. human. [Q9Y5F8-1]

Organism-specific databases

CTDi56099.
GeneCardsiPCDHGB7.
HGNCiHGNC:8714. PCDHGB7.
HPAiHPA008755.
MIMi604968. gene.
606304. gene.
neXtProtiNX_Q9Y5F8.
OpenTargetsiENSG00000254122.
PharmGKBiPA33062.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00840000129690.
HOGENOMiHOG000220892.
HOVERGENiHBG054878.
InParanoidiQ9Y5F8.
KOiK16496.
OMAiLTSVDHC.
OrthoDBiEOG091G00SP.
PhylomeDBiQ9Y5F8.
TreeFamiTF332299.

Miscellaneous databases

GeneWikiiPCDHGB7.
GenomeRNAii56099.
PROiQ9Y5F8.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000254122.
GenevisibleiQ9Y5F8. HS.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
[Graphical view]
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPCDGJ_HUMAN
AccessioniPrimary (citable) accession number: Q9Y5F8
Secondary accession number(s): Q9UN63
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: November 1, 1999
Last modified: November 30, 2016
This is version 133 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.