Q9Y572 (RIPK3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 128.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Receptor-interacting serine/threonine-protein kinase 3 EC=2.7.11.1 Alternative name(s): RIP-like protein kinase 3 Receptor-interacting protein 3 Short name=RIP-3 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 518 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Essential for programmed necrosis in response to death-inducing TNF-alpha family members. Upon induction of necrosis, RIPK3 interacts with, and phosphorylates RIPK1 to form a necrosis-inducing complex. RIPK3 binds to and enhances the activity of three metabolic enzymes: GLUL, GLUD1, and PYGL. These metabolic enzymes may eventually stimulate the tricarboxylic acid cycle and oxidative phosphorylation, which could result in enhanced ROS production By similarity. Ref.9 Ref.10 Ref.11 Ref.14 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Subunit structure | Interacts (via RIP homotypic interaction motif) with RIPK1 (via RIP homotypic interaction motif); this interaction induces RIPK1 phosphorylation and formation of a RIPK1-RIPK3 necrosis-inducing complex. Upon TNF-induced necrosis, the RIPK1-RIPK3 dimer further interacts with PGAM5 and MLKL; the formation of this complex leads to PGAM5 phosphorylation and increase in PGAM5 phosphatase activity. Binds TRAF2 and is recruited to the TNFR-1 signaling complex. Interacts with PYGL, GLUL and GLUD1; these interactions result in activation of these metabolic enzymes. Interacts with BIRC2/c-IAP1, BIRC3/c-IAP2 and XIAP/BIRC4. Ref.1 Ref.8 Ref.9 Ref.10 Ref.13 Ref.14 |
| Subcellular location | Cytoplasm By similarity. Cell membrane By similarity. Mitochondrion Potential. |
| Tissue specificity | Highly expressed in the pancreas. Detected at lower levels in heart, placenta, lung and kidney. Isoform 3 is significantly increased in colon and lung cancers. Ref.3 |
| Post-translational modification | RIPK1 and RIPK3 undergo reciprocal auto- and trans-phosphorylation. Phosphorylation of Ser-199 plays a role in the necroptotic function of RIPK3. Polyubiquitinated with 'Lys-48' and 'Lys-63'-linked chains by BIRC2/c-IAP1 and BIRC3/c-IAP2, leading to activation of NF-kappa-B. |
| Sequence similarities | Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. Contains 1 protein kinase domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| itself | 6 | EBI-298250,EBI-298250 | ||
| BIRC2 | Q13490 | 3 | EBI-298250,EBI-514538 | |
| BIRC3 | Q13489 | 3 | EBI-298250,EBI-517709 | |
| MLKL | Q8NB16 | 10 | EBI-298250,EBI-1055040 | |
| RIPK1 | Q13546 | 24 | EBI-298250,EBI-358507 | |
| SIRT2 | Q8IXJ6 | 2 | EBI-298250,EBI-477232 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9Y572-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9Y572-2) Also known as: Beta; The sequence of this isoform differs from the canonical sequence as follows: 220-518: VELPTEPSLV...PQGWYNHSGK → CQPNHHSCTKQCATGRTGLHWLSCPKPGLRLPA | ||||||
| Isoform 3 (identifier: Q9Y572-3) Also known as: Gamma; The sequence of this isoform differs from the canonical sequence as follows: 222-518: LPTEPSLVYE...PQGWYNHSGK → CKTLGGFWDP |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 518 | 518 | Receptor-interacting serine/threonine-protein kinase 3 | PRO_0000086610 | |||||
Regions | |||||||||
| Domain | 21 – 287 | 267 | Protein kinase | ||||||
| Nucleotide binding | 27 – 35 | 9 | ATP By similarity | ||||||
| Motif | 450 – 466 | 17 | RIP homotypic interaction motif (RHIM) | ||||||
Sites | |||||||||
| Active site | 142 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 50 | 1 | ATP | ||||||
Amino acid modifications | |||||||||
| Modified residue | 199 | 1 | Phosphoserine; by autocatalysis Ref.8 Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 220 – 518 | 299 | VELPT…NHSGK → CQPNHHSCTKQCATGRTGLH WLSCPKPGLRLPA in isoform 2. | VSP_035106 | |||||
| Alternative sequence | 222 – 518 | 297 | LPTEP…NHSGK → CKTLGGFWDP in isoform 3. | VSP_035107 | |||||
| Natural variant | 260 | 1 | E → V. Corresponds to variant rs7153640 [ dbSNP | Ensembl ]. | VAR_051664 | |||||
| Natural variant | 300 | 1 | T → M. Ref.15 Corresponds to variant rs34106261 [ dbSNP | Ensembl ]. | VAR_041048 | |||||
| Natural variant | 492 | 1 | P → Q. Ref.15 Corresponds to variant rs3212254 [ dbSNP | Ensembl ]. | VAR_041049 | |||||
Experimental info | |||||||||
| Mutagenesis | 50 | 1 | K → A: Abolishes kinase activity. Loss of PGAM5- and MLKL-binding. No effect on RIPK1-binding. Ref.1 Ref.2 Ref.14 | ||||||
| Mutagenesis | 50 | 1 | K → D: Abolishes kinase activity. Ref.1 Ref.2 Ref.14 | ||||||
| Sequence conflict | 30 | 1 | G → D in AAD39005. Ref.1 | ||||||
| Sequence conflict | 150 | 1 | L → P in AAD39005. Ref.1 | ||||||
| Sequence conflict | 309 | 1 | R → K in AAD39005. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification of RIP3, a RIP-like kinase that activates apoptosis and NFkappaB." Yu P.W., Huang B.C.B., Shen M., Quast J., Chan E., Xu X., Nolan G.P., Payan D.G., Luo Y. Curr. Biol. 9:539-542(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), MUTAGENESIS OF LYS-50, INTERACTION WITH RIPK1. Tissue: Cervix carcinoma and Lymphocyte. |
| [2] | "RIP3, a novel apoptosis-inducing kinase." Sun X., Lee J., Navas T., Baldwin D.T., Stewart T.A., Dixit V.M. J. Biol. Chem. 274:16871-16875(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), MUTAGENESIS OF LYS-50. Tissue: Aortic endothelium and Fetal brain. |
| [3] | "RIP3 beta and RIP3 gamma, two novel splice variants of receptor-interacting protein 3 (RIP3), downregulate RIP3-induced apoptosis." Yang Y., Hu W., Feng S., Ma J., Wu M. Biochem. Biophys. Res. Commun. 332:181-187(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), TISSUE SPECIFICITY. |
| [4] | "The DNA sequence and analysis of human chromosome 14." Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. Weissenbach J.Nature 421:601-607(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Thalamus. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Blood. |
| [8] | "Identification of a novel homotypic interaction motif required for the phosphorylation of receptor-interacting protein (RIP) by RIP3." Sun X., Yin J., Starovasnik M.A., Fairbrother W.J., Dixit V.M. J. Biol. Chem. 277:9505-9511(2002) [PubMed] [Europe PMC] [Abstract] Cited for: RIP HOMOTYPIC INTERACTION MOTIF, PHOSPHORYLATION AT SER-199, INTERACTION WITH RIPK1. |
| [9] | "RIP3, an energy metabolism regulator that switches TNF-induced cell death from apoptosis to necrosis." Zhang D.W., Shao J., Lin J., Zhang N., Lu B.J., Lin S.C., Dong M.Q., Han J. Science 325:332-336(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH PYGL; GLUL AND GLUD1. |
| [10] | "Receptor interacting protein kinase-3 determines cellular necrotic response to TNF-alpha." He S., Wang L., Miao L., Wang T., Du F., Zhao L., Wang X. Cell 137:1100-1111(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, PHOSPHORYLATION AT SER-199, INTERACTION WITH RIPK1. |
| [11] | "Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation." Cho Y.S., Challa S., Moquin D., Genga R., Ray T.D., Guildford M., Chan F.K. Cell 137:1112-1123(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [12] | "The role of the kinases RIP1 and RIP3 in TNF-induced necrosis." Vandenabeele P., Declercq W., Van Herreweghe F., Vanden Berghe T. Sci. Signal. 3:RE4-RE4(2010) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| [13] | "cIAP1/2 are direct E3 ligases conjugating diverse types of ubiquitin chains to receptor interacting proteins kinases 1 to 4 (RIP1-4)." Bertrand M.J., Lippens S., Staes A., Gilbert B., Roelandt R., De Medts J., Gevaert K., Declercq W., Vandenabeele P. PLoS ONE 6:E22356-E22356(2011) [PubMed] [Europe PMC] [Abstract] Cited for: UBIQUITINATION BY BIRC2/C-IAP1 AND BIRC3/C-IAP2, INTERACTION WITH BIRC2/C-IAP1; BIRC3/C-IAP2 AND XIAP/BIRC4. |
| [14] | "The mitochondrial phosphatase PGAM5 functions at the convergence point of multiple necrotic death pathways." Wang Z., Jiang H., Chen S., Du F., Wang X. Cell 148:228-243(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, IDENTIFICATION IN COMPLEX WITH PGAM5; RIPK1 AND MLKL, MUTAGENESIS OF LYS-50. |
| [15] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] MET-300 AND GLN-492. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF156884 mRNA. Translation: AAD39005.1. AY453693 mRNA. Translation: AAS16359.1. AY494982 mRNA. Translation: AAS75516.1. AY494983 mRNA. Translation: AAS75517.1. AL096870 Genomic DNA. No translation available. AK296140 mRNA. Translation: BAG58881.1. CH471078 Genomic DNA. Translation: EAW66021.1. BC062584 mRNA. Translation: AAH62584.1. |
| IPI | IPI00847572. IPI00896383. IPI00940090. |
| RefSeq | NP_006862.2. NM_006871.3. |
| UniGene | Hs.268551. |
3D structure databases | |
| ProteinModelPortal | Q9Y572. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9Y572. 10 interactions. |
| MINT | MINT-1131399. |
| STRING | 9606.ENSP00000216274. |
PTM databases | |
| PhosphoSite | Q9Y572. |
Polymorphism databases | |
| DMDM | 205371831. |
Proteomic databases | |
| PaxDb | Q9Y572. |
| PRIDE | Q9Y572. |
Protocols and materials databases | |
| DNASU | 11035. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000216274; ENSP00000216274; ENSG00000129465. ENST00000554756; ENSP00000452328; ENSG00000129465. |
| GeneID | 11035. |
| KEGG | hsa:11035. |
| UCSC | uc001wpa.3. human. |
Organism-specific databases | |
| CTD | 11035. |
| GeneCards | GC14M024811. |
| HGNC | HGNC:10021. RIPK3. |
| MIM | 605817. gene. |
| neXtProt | NX_Q9Y572. |
| PharmGKB | PA34396. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0515. |
| HOGENOM | HOG000035101. |
| HOVERGEN | HBG062538. |
| InParanoid | Q9Y572. |
| KO | K08847. |
| OMA | QCPRPWP. |
| OrthoDB | EOG40CHHC. |
| PhylomeDB | Q9Y572. |
Enzyme and pathway databases | |
| BRENDA | 2.7.10.2. 2681. |
| Reactome | REACT_6900. Immune System. |
| SignaLink | Q9Y572. |
Gene expression databases | |
| Bgee | Q9Y572. |
| CleanEx | HS_RIPK3. |
| Genevestigator | Q9Y572. |
| GermOnline | ENSG00000129465. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR025735. RHIM_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] |
| Pfam | PF00069. Pkinase. 1 hit. PF12721. RHIM. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL1795199. |
| GenomeRNAi | 11035. |
| NextBio | 41936. |
| SOURCE | Search... |
Entry information
| Entry name | RIPK3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9Y572 Secondary accession number(s): B4DJL9 Q6P5Y1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
