Q9Y4W2 (LAS1L_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 87.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein LAS1 homolog | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 734 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Subunit structure | Component of some MLL1/MLL complex, at least composed of the core components MLL, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components C17orf49, CHD8, E2F6, HSP70, IN80C, KIAA1267, LAS1L, MAX, MCRS1, MGA, KAT8/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10. |
| Subcellular location | |
| Sequence similarities | Belongs to the LAS1 family. |
| Sequence caution | The sequence BAB84913.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Cellular component | MLL1 complex Inferred from direct assay Ref.7. Source: UniProtKB cytoplasmInferred from direct assay. Source: HPA nucleolusInferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PNKP | Q96T60 | 1 | EBI-1051591,EBI-1045072 |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9Y4W2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9Y4W2-2) The sequence of this isoform differs from the canonical sequence as follows: 348-365: DGQTEVQRGEGTDPKSHK → E | ||||||
| Isoform 3 (identifier: Q9Y4W2-3) The sequence of this isoform differs from the canonical sequence as follows: 79-120: Missing. 348-365: DGQTEVQRGEGTDPKSHK → E | ||||||
| Note: Gene prediction based on EST data. No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q9Y4W2-4) The sequence of this isoform differs from the canonical sequence as follows: 283-291: VLEKFRYLP → GGCAGCFSG 292-734: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 734 | 734 | Protein LAS1 homolog | PRO_0000211559 | |||||
Amino acid modifications | |||||||||
| Modified residue | 523 | 1 | Phosphoserine Ref.8 Ref.9 Ref.10 | ||||||
| Modified residue | 560 | 1 | Phosphoserine Ref.9 Ref.11 | ||||||
| Modified residue | 617 | 1 | Phosphoserine Ref.12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 79 – 120 | 42 | Missing in isoform 3. | VSP_015178 | |||||
| Alternative sequence | 283 – 291 | 9 | VLEKFRYLP → GGCAGCFSG in isoform 4. | VSP_015179 | |||||
| Alternative sequence | 292 – 734 | 443 | Missing in isoform 4. | VSP_015180 | |||||
| Alternative sequence | 348 – 365 | 18 | DGQTE…PKSHK → E in isoform 2 and isoform 3. | VSP_015181 | |||||
| Natural variant | 170 | 1 | R → C in a colorectal cancer sample; somatic mutation. Ref.14 | VAR_036587 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | Zhao B., Xu Y.Y., Liu Y.Q., Wang X.Y., Liu B., Ye J., Song L., Zhao Y., Cao H.Q., Zhao X.W., Gao Y., Liu L.S., Ding J.F., Gao R.L., Wu Q.Y., Qiang B.Q., Yuan J.G., Liew C.C., Zhao M.S., Hui R.T. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Aorta. |
| [2] | "The nucleotide sequence of a long cDNA clone isolated from human spleen." Jikuya H., Takano J., Nomura N., Kikuno R., Nagase T., Ohara O. Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Spleen. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Teratocarcinoma. |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: Bone marrow, Lung and Placenta. |
| [6] | "Functional proteomic analysis of human nucleolus." Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J. Mol. Biol. Cell 13:4100-4109(2002) [PubMed: 12429849] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [7] | "Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF." Dou Y., Milne T.A., Tackett A.J., Smith E.R., Fukuda A., Wysocka J., Allis C.D., Chait B.T., Hess J.L., Roeder R.G. Cell 121:873-885(2005) [PubMed: 15960975] [Abstract] Cited for: IDENTIFICATION IN THE MLL1/MLL COMPLEX. |
| [8] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-523, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis." Wang B., Malik R., Nigg E.A., Korner R. Anal. Chem. 80:9526-9533(2008) [PubMed: 19007248] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-523 AND SER-560, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-523, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-560, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-617, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed: 16959974] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] CYS-170. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF116730 mRNA. Translation: AAO15306.1. AK074087 mRNA. Translation: BAB84913.1. Different initiation. AK022587 mRNA. Translation: BAB14114.1. AL050306 Genomic DNA. Translation: CAB51351.1. AL050306 Genomic DNA. Translation: CAI42835.1. AL050306 Genomic DNA. Translation: CAI42836.1. BC014545 mRNA. Translation: AAH14545.1. BC018610 mRNA. Translation: AAH18610.1. BC019302 mRNA. Translation: AAH19302.1. |
| IPI | IPI00009917. IPI00152781. IPI00641990. IPI00645869. |
| RefSeq | NP_001164120.1. NM_001170649.1. NP_001164121.1. NM_001170650.1. NP_112483.1. NM_031206.4. |
| UniGene | Hs.522675. |
3D structure databases | |
| ProteinModelPortal | Q9Y4W2. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9Y4W2. 5 interactions. |
| STRING | Q9Y4W2. |
PTM databases | |
| PhosphoSite | Q9Y4W2. |
Polymorphism databases | |
| DMDM | 73920837. |
2D gel databases | |
| SWISS-2DPAGE | Q9Y4W2. |
Proteomic databases | |
| PRIDE | Q9Y4W2. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000374811; ENSP00000363944; ENSG00000001497. |
| GeneID | 81887. |
| KEGG | hsa:81887. |
| UCSC | uc004dwa.1. human. uc004dwc.1. human. uc004dwd.1. human. |
Organism-specific databases | |
| CTD | 81887. |
| GeneCards | GC0XM064649. |
| H-InvDB | HIX0016841. |
| HGNC | HGNC:25726. LAS1L. |
| HPA | HPA044431. |
| neXtProt | NX_Q9Y4W2. |
| PharmGKB | PA128394732. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG08432. |
| GeneTree | ENSGT00390000014785. |
| HOGENOM | HBG283652. |
| HOVERGEN | HBG080556. |
| InParanoid | Q9Y4W2. |
| OMA | LLRICSI. |
| OrthoDB | EOG4ZS92M. |
| PhylomeDB | Q9Y4W2. |
Gene expression databases | |
| ArrayExpress | Q9Y4W2. |
| Bgee | Q9Y4W2. |
| CleanEx | HS_LAS1L. |
| Genevestigator | Q9Y4W2. |
| GermOnline | ENSG00000001497. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR007174. Las1. [Graphical view] |
| PANTHER | PTHR15002. Las1. 1 hit. |
| Pfam | PF04031. Las1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 72228. |
Entry information
| Entry name | LAS1L_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9Y4W2 Secondary accession number(s): Q5JXQ0, Q8TEN5, Q9H9V5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with