Q9Y463 (DYR1B_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 120.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Dual specificity tyrosine-phosphorylation-regulated kinase 1B EC=2.7.12.1 Alternative name(s): Minibrain-related kinase Mirk protein kinase | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 629 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Dual-specificity kinase which possesses both serine/ threonine and tyrosine kinase activities. Enhances the transcriptional activity of TCF1/HNF1A and FOXO1. Inhibits epithelial cell migration. Mediates colon carcinoma cell survival in mitogen-poor environments. Ref.2 Ref.5 Ref.6 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Enzyme regulation | Inhibited by RANBP9. |
| Subunit structure | Dimer. Interacts with DCOHM, MAP2K3/MKK3, RANBP9 and TCF1/HNF1A. Part of a complex consisting of RANBP9, RAN, DYRK1B and COPS5. Interatcs with DCAF7. Ref.5 Ref.6 Ref.7 |
| Subcellular location | |
| Tissue specificity | Highest expression in skeletal muscle, testis, heart and brain with little expression in colon or lung. Expressed in a variety of tumor cell lines. Ref.2 |
| Post-translational modification | Autophosphorylated on tyrosine residues. Phosphorylated by MAP kinase. Tyrosine phosphorylation may be required for dimerization. Ref.2 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 |
| Sequence similarities | Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MNB/DYRK subfamily. Contains 1 protein kinase domain. |
| Sequence caution | The sequence AAC28914.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| HNF1A | P20823 | 4 | EBI-634187,EBI-636034 | |
| MAP2K3 | P46734 | 2 | EBI-634187,EBI-602462 | |
| PCBD2 | Q9H0N5 | 2 | EBI-634187,EBI-634289 | |
| RANBP9 | Q96S59 | 4 | EBI-634187,EBI-636085 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9Y463-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9Y463-2) The sequence of this isoform differs from the canonical sequence as follows: 366-405: Missing. | ||||||
| Isoform 3 (identifier: Q9Y463-3) The sequence of this isoform differs from the canonical sequence as follows: 378-405: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 629 | 629 | Dual specificity tyrosine-phosphorylation-regulated kinase 1B | PRO_0000085934 | |||||
Regions | |||||||||
| Domain | 111 – 431 | 321 | Protein kinase | ||||||
| Nucleotide binding | 117 – 125 | 9 | ATP By similarity | ||||||
| Region | 480 – 520 | 41 | Interaction with RANBP9 | ||||||
| Motif | 69 – 86 | 18 | Bipartite nuclear localization signal Potential | ||||||
| Compositional bias | 558 – 561 | 4 | Poly-Pro | ||||||
Sites | |||||||||
| Active site | 239 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 140 | 1 | ATP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 57 | 1 | N6-acetyllysine Ref.14 | ||||||
| Modified residue | 271 | 1 | Phosphotyrosine; by autocatalysis Ref.11 | ||||||
| Modified residue | 273 | 1 | Phosphotyrosine; by autocatalysis Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 | ||||||
Natural variations | |||||||||
| Alternative sequence | 366 – 405 | 40 | Missing in isoform 2. | VSP_004925 | |||||
| Alternative sequence | 378 – 405 | 28 | Missing in isoform 3. | VSP_004926 | |||||
| Natural variant | 28 | 1 | L → P. Ref.15 Corresponds to variant rs34587974 [ dbSNP | Ensembl ]. | VAR_040454 | |||||
| Natural variant | 102 | 1 | R → H. Ref.15 Corresponds to variant rs55687541 [ dbSNP | Ensembl ]. | VAR_040455 | |||||
| Natural variant | 234 | 1 | S → G. Ref.15 Corresponds to variant rs35858874 [ dbSNP | Ensembl ]. | VAR_040456 | |||||
| Natural variant | 275 | 1 | Q → R in a metastatic melanoma sample; somatic mutation. Ref.15 | VAR_040457 | |||||
Experimental info | |||||||||
| Mutagenesis | 140 | 1 | K → R: Abolishes kinase activity. Ref.2 | ||||||
| Mutagenesis | 271 | 1 | Y → F: Abolishes kinase activity; when associated with F-273. Ref.2 | ||||||
| Mutagenesis | 273 | 1 | Y → F: Abolishes kinase activity; when associated with F-271. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and characterization of DYRK1B, a novel member of the DYRK family of protein kinases." Leder S., Weber Y., Altafaj X., Estivill X., Joost H.-G., Becker W. Biochem. Biophys. Res. Commun. 254:474-479(1999) [PubMed: 9918863] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3). Tissue: Testis. |
| [2] | "Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells." Lee K., Deng X., Friedman E. Cancer Res. 60:3631-3637(2000) [PubMed: 10910078] [Abstract] Cited for: NUCLEOTIDE SEQUENCE (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, PHOSPHORYLATION, MUTAGENESIS OF LYS-140; TYR-271 AND TYR-273. Tissue: Colon carcinoma. |
| [3] | "The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. Lucas S.M.Nature 428:529-535(2004) [PubMed: 15057824] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Pancreas. |
| [5] | "Mirk protein kinase is activated by MKK3 and functions as a transcriptional activator of HNF1alpha." Lim S., Jin K., Friedman E. J. Biol. Chem. 277:25040-25046(2002) [PubMed: 11980910] [Abstract] Cited for: FUNCTION, INTERACTION WITH DCOHM; MAP2K3 AND TCF1. Tissue: Muscle. |
| [6] | "Serine/threonine kinase Mirk/Dyrk1B is an inhibitor of epithelial cell migration and is negatively regulated by the Met adaptor Ran-binding protein M." Zou Y., Lim S., Lee K., Deng X., Friedman E. J. Biol. Chem. 278:49573-49581(2003) [PubMed: 14500717] [Abstract] Cited for: FUNCTION, DIMERIZATION, INTERACTION WITH RANBP9, IDENTIFICATION IN A COMPLEX WITH RAN; RANBP9 AND COPS5. |
| [7] | "Phosphorylation of Ser640 in muscle glycogen synthase by DYRK family protein kinases." Skurat A.V., Dietrich A.D. J. Biol. Chem. 279:2490-2498(2004) [PubMed: 14593110] [Abstract] Cited for: INTERACTION WITH DCAF7. |
| [8] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-273, MASS SPECTROMETRY. Tissue: Lung carcinoma. |
| [9] | "Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks." Wolf-Yadlin A., Hautaniemi S., Lauffenburger D.A., White F.M. Proc. Natl. Acad. Sci. U.S.A. 104:5860-5865(2007) [PubMed: 17389395] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-273, MASS SPECTROMETRY. Tissue: Mammary epithelium. |
| [10] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-273, MASS SPECTROMETRY. Tissue: Platelet. |
| [11] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-271 AND TYR-273, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-273, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-273, MASS SPECTROMETRY. |
| [14] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-57, MASS SPECTROMETRY. |
| [15] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed: 17344846] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] PRO-28; HIS-102; GLY-234 AND ARG-275. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | Y17999 mRNA. Translation: CAA76991.1. Y17999 mRNA. Translation: CAA76990.1. Y17999 mRNA. Translation: CAA76989.1. AF205861 mRNA. Translation: AAF15893.1. AC005393 Genomic DNA. Translation: AAC28914.1. Sequence problems. BC018751 mRNA. Translation: AAH18751.1. BC025291 mRNA. Translation: AAH25291.1. |
| IPI | IPI00000352. IPI00215873. IPI00332215. |
| PIR | JG0195. |
| RefSeq | NP_004705.1. NM_004714.1. NP_006474.1. NM_006483.1. NP_006475.1. NM_006484.1. |
| UniGene | Hs.130988. |
3D structure databases | |
| ProteinModelPortal | Q9Y463. |
| SMR | Q9Y463. Positions 100-433. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9Y463. 5 interactions. |
| MINT | MINT-2790122. |
| STRING | Q9Y463. |
PTM databases | |
| PhosphoSite | Q9Y463. |
Polymorphism databases | |
| DMDM | 9296963. |
Proteomic databases | |
| PRIDE | Q9Y463. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000323039; ENSP00000312789; ENSG00000105204. |
| GeneID | 9149. |
| KEGG | hsa:9149. |
| UCSC | uc002omi.1. human. uc002omj.1. human. uc002omk.1. human. |
Organism-specific databases | |
| CTD | 9149. |
| GeneCards | GC19M040316. |
| H-InvDB | HIX0202834. |
| HGNC | HGNC:3092. DYRK1B. |
| HPA | HPA028786. |
| MIM | 604556. gene. |
| neXtProt | NX_Q9Y463. |
| PharmGKB | PA27549. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG14617. |
| GeneTree | ENSGT00550000074148. |
| HOGENOM | HBG755340. |
| HOVERGEN | HBG051425. |
| InParanoid | Q9Y463. |
| OMA | PAPMLEQ. |
| OrthoDB | EOG42NJ05. |
| PhylomeDB | Q9Y463. |
Enzyme and pathway databases | |
| BRENDA | 2.7.12.1. 2681. |
Gene expression databases | |
| ArrayExpress | Q9Y463. |
| Bgee | Q9Y463. |
| CleanEx | HS_DYRK1B. |
| Genevestigator | Q9Y463. |
| GermOnline | ENSG00000105204. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR017442. Se/Thr_kinase-like_dom. IPR008271. Ser/Thr_kinase_AS. IPR002290. Ser/Thr_kinase_dom. [Graphical view] |
| KO | K08825. |
| Pfam | PF00069. Pkinase. 1 hit. [Graphical view] |
| SMART | SM00220. S_TKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 34319. |
| SOURCE | Search... |
Entry information
| Entry name | DYR1B_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9Y463 Secondary accession number(s): O75258, O75788, O75789 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 19 Human chromosome 19: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with