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Protein

Nucleolar protein 16

Gene

NOP16

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • poly(A) RNA binding Source: UniProtKB

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleolar protein 16
Alternative name(s):
HBV pre-S2 trans-regulated protein 3
Gene namesi
Name:NOP16
ORF Names:CGI-117, HSPC111
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:26934. NOP16.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA164724025.

Polymorphism and mutation databases

BioMutaiNOP16.
DMDMi115311631.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 178178Nucleolar protein 16PRO_0000050817Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei8 – 81PhosphothreonineCombined sources
Modified residuei16 – 161PhosphoserineCombined sources
Modified residuei90 – 901N6-acetyllysineCombined sources
Modified residuei144 – 1441PhosphothreonineCombined sources

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ9Y3C1.
MaxQBiQ9Y3C1.
PaxDbiQ9Y3C1.
PRIDEiQ9Y3C1.
TopDownProteomicsiQ9Y3C1-1. [Q9Y3C1-1]

2D gel databases

SWISS-2DPAGEQ9Y3C1.

PTM databases

iPTMnetiQ9Y3C1.
PhosphoSiteiQ9Y3C1.
SwissPalmiQ9Y3C1.

Expressioni

Gene expression databases

BgeeiQ9Y3C1.
CleanExiHS_NOP16.
ExpressionAtlasiQ9Y3C1. baseline and differential.
GenevisibleiQ9Y3C1. HS.

Organism-specific databases

HPAiHPA036506.
HPA058147.

Interactioni

Protein-protein interaction databases

BioGridi119568. 27 interactions.
IntActiQ9Y3C1. 7 interactions.
MINTiMINT-4728468.
STRINGi9606.ENSP00000373810.

Structurei

3D structure databases

ProteinModelPortaliQ9Y3C1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the NOP16 family.Curated

Phylogenomic databases

eggNOGiKOG4706. Eukaryota.
ENOG4111QB6. LUCA.
GeneTreeiENSGT00390000003426.
HOGENOMiHOG000169215.
HOVERGENiHBG098588.
InParanoidiQ9Y3C1.
OMAiLFHRETE.
OrthoDBiEOG7V7699.
PhylomeDBiQ9Y3C1.
TreeFamiTF323541.

Family and domain databases

InterProiIPR019002. Ribosome_biogenesis_Nop16.
[Graphical view]
PfamiPF09420. Nop16. 2 hits.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9Y3C1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPKAKGKTRR QKFGYSVNRK RLNRNARRKA APRIECSHIR HAWDHAKSVR
60 70 80 90 100
QNLAEMGLAV DPNRAVPLRK RKVKAMEVDI EERPKELVRK PYVLNDLEAE
110 120 130 140 150
ASLPEKKGNT LSRDLIDYVR YMVENHGEDY KAMARDEKNY YQDTPKQIRS
160 170
KINVYKRFYP AEWQDFLDSL QKRKMEVE
Length:178
Mass (Da):21,188
Last modified:September 19, 2006 - v2
Checksum:iD9139BE32DA81FC5
GO
Isoform 2 (identifier: Q9Y3C1-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     132-178: AMARDEKNYY...SLQKRKMEVE → SGKTSSILCR...RVGDVNIVCT

Show »
Length:236
Mass (Da):27,306
Checksum:iFD6FA2B669720AA7
GO
Isoform 3 (identifier: Q9Y3C1-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     132-178: AMARDEKNYY...SLQKRKMEVE → QSGKTSSILC...QNLLFSGWVM

Note: No experimental confirmation available.
Show »
Length:232
Mass (Da):26,561
Checksum:i6DB17D8B0E4F0AD7
GO

Sequence cautioni

The sequence AAH19331.1 differs from that shown. Reason: Frameshift at position 195. Curated
The sequence BAG62525.1 differs from that shown. Reason: Frameshift at position 195. Curated
The sequence EAW85085.1 differs from that shown. Reason: Frameshift at position 195. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti32 – 332PR → RG in AAD34112 (PubMed:10810093).Curated
Sequence conflicti32 – 332PR → RG in AAF29075 (PubMed:11042152).Curated
Sequence conflicti178 – 1781E → D in CAG33450 (Ref. 5) Curated
Isoform 2 (identifier: Q9Y3C1-2)
Sequence conflicti171 – 1711C → F in BAG62525 (PubMed:14702039).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei132 – 17847AMARD…KMEVE → SGKTSSILCRRGRWRWSDWF TSQLPQAEASPGPVKLEPGC KARRCCVAPEELARSHGIRR LHTRAHSPLWGRNCSQRLQF IFIWGFTEKPEPAVFRVGDV NIVCT in isoform 2. 2 PublicationsVSP_045583Add
BLAST
Alternative sequencei132 – 17847AMARD…KMEVE → QSGKTSSILCRRGRWRWSDW FTSQLPQAEASPGPVKLEPG CKARRCCVAPEELARSHGIR RLHTHVHTPRSGEGTVLRGS NLYSSGGSRKSQNLLFSGWV M in isoform 3. 1 PublicationVSP_057393Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY561704 mRNA. Translation: AAS66977.1.
AF151875 mRNA. Translation: AAD34112.1.
AF161460 mRNA. Translation: AAF29075.1.
AK300883 mRNA. Translation: BAG62525.1. Frameshift.
CR457169 mRNA. Translation: CAG33450.1.
AC138956 Genomic DNA. No translation available.
KF459629 Genomic DNA. No translation available.
CH471195 Genomic DNA. Translation: EAW85084.1.
CH471195 Genomic DNA. Translation: EAW85085.1. Frameshift.
BC019331 mRNA. Translation: AAH19331.1. Frameshift.
BC032424 mRNA. Translation: AAH32424.1.
BC040106 mRNA. Translation: AAH40106.1.
CCDSiCCDS43403.1. [Q9Y3C1-1]
CCDS78091.1. [Q9Y3C1-3]
RefSeqiNP_001243468.2. NM_001256539.3. [Q9Y3C1-3]
NP_001243469.2. NM_001256540.3.
NP_001278234.1. NM_001291305.2.
NP_001278236.1. NM_001291307.2.
NP_001278237.1. NM_001291308.2.
NP_001304904.1. NM_001317975.1.
NP_057475.2. NM_016391.7. [Q9Y3C1-1]
UniGeneiHs.696283.

Genome annotation databases

EnsembliENST00000614830; ENSP00000480832; ENSG00000048162. [Q9Y3C1-1]
ENST00000618911; ENSP00000483001; ENSG00000048162. [Q9Y3C1-3]
GeneIDi51491.
KEGGihsa:51491.
UCSCiuc032vuv.2. human. [Q9Y3C1-1]
uc063jyi.1. human.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY561704 mRNA. Translation: AAS66977.1.
AF151875 mRNA. Translation: AAD34112.1.
AF161460 mRNA. Translation: AAF29075.1.
AK300883 mRNA. Translation: BAG62525.1. Frameshift.
CR457169 mRNA. Translation: CAG33450.1.
AC138956 Genomic DNA. No translation available.
KF459629 Genomic DNA. No translation available.
CH471195 Genomic DNA. Translation: EAW85084.1.
CH471195 Genomic DNA. Translation: EAW85085.1. Frameshift.
BC019331 mRNA. Translation: AAH19331.1. Frameshift.
BC032424 mRNA. Translation: AAH32424.1.
BC040106 mRNA. Translation: AAH40106.1.
CCDSiCCDS43403.1. [Q9Y3C1-1]
CCDS78091.1. [Q9Y3C1-3]
RefSeqiNP_001243468.2. NM_001256539.3. [Q9Y3C1-3]
NP_001243469.2. NM_001256540.3.
NP_001278234.1. NM_001291305.2.
NP_001278236.1. NM_001291307.2.
NP_001278237.1. NM_001291308.2.
NP_001304904.1. NM_001317975.1.
NP_057475.2. NM_016391.7. [Q9Y3C1-1]
UniGeneiHs.696283.

3D structure databases

ProteinModelPortaliQ9Y3C1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi119568. 27 interactions.
IntActiQ9Y3C1. 7 interactions.
MINTiMINT-4728468.
STRINGi9606.ENSP00000373810.

PTM databases

iPTMnetiQ9Y3C1.
PhosphoSiteiQ9Y3C1.
SwissPalmiQ9Y3C1.

Polymorphism and mutation databases

BioMutaiNOP16.
DMDMi115311631.

2D gel databases

SWISS-2DPAGEQ9Y3C1.

Proteomic databases

EPDiQ9Y3C1.
MaxQBiQ9Y3C1.
PaxDbiQ9Y3C1.
PRIDEiQ9Y3C1.
TopDownProteomicsiQ9Y3C1-1. [Q9Y3C1-1]

Protocols and materials databases

DNASUi51491.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000614830; ENSP00000480832; ENSG00000048162. [Q9Y3C1-1]
ENST00000618911; ENSP00000483001; ENSG00000048162. [Q9Y3C1-3]
GeneIDi51491.
KEGGihsa:51491.
UCSCiuc032vuv.2. human. [Q9Y3C1-1]
uc063jyi.1. human.

Organism-specific databases

CTDi51491.
GeneCardsiNOP16.
HGNCiHGNC:26934. NOP16.
HPAiHPA036506.
HPA058147.
MIMi612861. gene.
neXtProtiNX_Q9Y3C1.
PharmGKBiPA164724025.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG4706. Eukaryota.
ENOG4111QB6. LUCA.
GeneTreeiENSGT00390000003426.
HOGENOMiHOG000169215.
HOVERGENiHBG098588.
InParanoidiQ9Y3C1.
OMAiLFHRETE.
OrthoDBiEOG7V7699.
PhylomeDBiQ9Y3C1.
TreeFamiTF323541.

Miscellaneous databases

ChiTaRSiNOP16. human.
GenomeRNAii51491.
NextBioi35475328.
PROiQ9Y3C1.
SOURCEiSearch...

Gene expression databases

BgeeiQ9Y3C1.
CleanExiHS_NOP16.
ExpressionAtlasiQ9Y3C1. baseline and differential.
GenevisibleiQ9Y3C1. HS.

Family and domain databases

InterProiIPR019002. Ribosome_biogenesis_Nop16.
[Graphical view]
PfamiPF09420. Nop16. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Screening and identification of genes trans-regulated by hepatitis B virus pre-S2 protein by microarray assay."
    Ji D., Cheng J., Dong J., Liu Y., Wang J.-J., Guo J.
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics."
    Lai C.-H., Chou C.-Y., Ch'ang L.-Y., Liu C.-S., Lin W.-C.
    Genome Res. 10:703-713(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  3. "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells."
    Zhang Q.-H., Ye M., Wu X.-Y., Ren S.-X., Zhao M., Zhao C.-J., Fu G., Shen Y., Fan H.-Y., Lu G., Zhong M., Xu X.-R., Han Z.-G., Zhang J.-W., Tao J., Huang Q.-H., Zhou J., Hu G.-X.
    , Gu J., Chen S.-J., Chen Z.
    Genome Res. 10:1546-1560(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Umbilical cord blood.
  4. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Small intestine.
  5. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
    Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  6. "The DNA sequence and comparative analysis of human chromosome 5."
    Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S.
    , Branscomb E., Caoile C., Challacombe J.F., Chan Y.M., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Lopez F., Lou Y., Martinez D., Medina C., Morgan J., Nandkeshwar R., Noonan J.P., Pitluck S., Pollard M., Predki P., Priest J., Ramirez L., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wheeler J., Wu K., Yang J., Dickson M., Cheng J.-F., Eichler E.E., Olsen A., Pennacchio L.A., Rokhsar D.S., Richardson P., Lucas S.M., Myers R.M., Rubin E.M.
    Nature 431:268-274(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
    Tissue: Lung, Mammary gland and Skin.
  9. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  10. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-16 AND THR-144, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  11. "Lysine acetylation targets protein complexes and co-regulates major cellular functions."
    Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.
    Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-90, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  12. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  13. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-8, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  14. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiNOP16_HUMAN
AccessioniPrimary (citable) accession number: Q9Y3C1
Secondary accession number(s): B4DV13
, D6RGD3, Q05D05, Q6IAI6, Q6PIM0, Q8IXL5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: September 19, 2006
Last modified: May 11, 2016
This is version 130 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.