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Reviewed, UniProtKB/Swiss-Prot Q9Y230 (RUVB2_HUMAN)

Last modified July 7, 2009. Version 105. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    RuvB-like 2
    EC=3.6.1.-
Alternative name(s):
    48 kDa TATA box-binding protein-interacting protein
      Short name=48 kDa TBP-interacting protein
    TIP49b
    Repressing pontin 52
      Short name=Reptin 52
    51 kDa erythrocyte cytosolic protein
      Short name=ECP-51
    TIP60-associated protein 54-beta
      Short name=TAP54-beta
    INO80 complex subunit J
Gene names
Name: RUVBL2
Synonyms: INO80J, TIP48, TIP49B
ORF Names: CGI-46
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length463 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Possesses single-stranded DNA-stimulated ATPase and ATP-dependent DNA helicase (5' to 3') activity. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. The NuA4 complex ATPase and helicase activities seem to be, at least in part, contributed by the association of RUVBL1 and RUVBL2 with EP400. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. RUVBL2 plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Subunit structure

Forms a multimeric complex with RUVBL1. Interacts with the transcriptional activation domain of MYC. Interacts With ATF2. Component of the RNA polymerase II holoenzyme complex. May also act to bridge the LEF1/TCF1-CTNNB1 complex and TBP. Component of the NuA4 histone acetyltransferase complex which contains the catalytic subunit HTATIP/TIP60 and the subunits EP400, TRRAP/PAF400, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2, ING3, actin, ACTL6A/BAF53A, MORF4L1/MRG15, MORF4L2/MRGX, MRGBP, YEATS4/GAS41, VPS72/YL1 and EAF6. The NuA4 complex interacts with MYC and the adenovirus E1A protein. RUVBL2 interacts with EP400. Component of a NuA4-related complex which contains EP400, TRRAP/PAF400, SRCAP, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2, actin, ACTL6A/BAF53A, VPS72 and YEATS4/GAS41. Interacts with NPAT. Component of the chromatin-remodeling INO80 complex, at least composed of ACTL6A, ACTR5, ACTR8, RVBL1, RVBL2, INO80, INO80B, INO80C, INO80D and INO80E. Ref.2 Ref.5 Ref.15 Ref.19

Subcellular location

Nucleus matrix. Nucleusnucleoplasm. Cytoplasm. Membrane. Note: Mainly localized in the nucleus, associated with nuclear matrix or in the nuclear cytosol. Although it is also present in the cytoplasm and associated with the cell membranes.

Tissue specificity

Ubiquitously expressed. Highly expressed in testis and thymus.

Domain

The C-terminal domain is required for association with ATF2.

Post-translational modification

Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.18

Sequence similarities

Belongs to the ruvB family.

Sequence caution

The sequence AAD34041.1 differs from that shown. Reason: Frameshift at position 401.

The sequence AAH08355.1 differs from that shown. Reason: Frameshift at position 191.

Ontologies

Keywords
   Biological processDNA recombination
Growth regulation
Transcription
Transcription regulation
   Cellular componentCytoplasm
Membrane
Nucleus
   LigandATP-binding
Nucleotide-binding
   Molecular functionActivator
Chromatin regulator
Helicase
Hydrolase
   PTMAcetylation
Phosphoprotein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Gene Ontology (GO)
   Biological processDNA recombination Ref.2

Traceable author statement. Source: ProtInc

DNA repair Ref.2

Traceable author statement. Source: ProtInc

histone H2A acetylation

Inferred from direct assay. Source: UniProtKB

histone H4 acetylation

Inferred from direct assay. Source: UniProtKB

protein folding Ref.1

Traceable author statement. Source: ProtInc

regulation of growth

Inferred from electronic annotation. Source: UniProtKB-KW

regulation of transcription, DNA-dependent

Inferred from electronic annotation. Source: UniProtKB-KW

transcription

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentNuA4 histone acetyltransferase complex Ref.13 Ref.16

Inferred from direct assay. Source: UniProtKB

cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

nuclear matrix

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

ATP-dependent DNA helicase activity Ref.2

Traceable author statement. Source: ProtInc

damaged DNA binding

Inferred from electronic annotation. Source: InterPro

identical protein binding Ref.13

Inferred from direct assay. Source: UniProtKB

unfolded protein binding Ref.1

Traceable author statement. Source: ProtInc

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.11 Ref.12
Chain2 – 463462RuvB-like 2
PRO_0000165644

Regions

Nucleotide binding77 – 848ATP

Amino acid modifications

Modified residue21N-acetylalanine Ref.12
Modified residue2201Phosphoserine Ref.18

Experimental info

Sequence conflict2141D → N in AAD34041. Ref.6
Sequence conflict257 – 2582FL → YV AA sequence Ref.5

Secondary structure

............... 463
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q9Y230-1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 54C78E9C587D975A

FASTA46351,157
        10         20         30         40         50         60 
MATVTATTKV PEIRDVTRIE RIGAHSHIRG LGLDDALEPR QASQGMVGQL AARRAAGVVL 

        70         80         90        100        110        120 
EMIREGKIAG RAVLIAGQPG TGKTAIAMGM AQALGPDTPF TAIAGSEIFS LEMSKTEALT 

       130        140        150        160        170        180 
QAFRRSIGVR IKEETEIIEG EVVEIQIDRP ATGTGSKVGK LTLKTTEMET IYDLGTKMIE 

       190        200        210        220        230        240 
SLTKDKVQAG DVITIDKATG KISKLGRSFT RARDYDAMGS QTKFVQCPDG ELQKRKEVVH 

       250        260        270        280        290        300 
TVSLHEIDVI NSRTQGFLAL FSGDTGEIKS EVREQINAKV AEWREEGKAE IIPGVLFIDE 

       310        320        330        340        350        360 
VHMLDIESFS FLNRALESDM APVLIMATNR GITRIRGTSY QSPHGIPIDL LDRLLIVSTT 

       370        380        390        400        410        420 
PYSEKDTKQI LRIRCEEEDV EMSEDAYTVL TRIGLETSLR YAIQLITAAS LVCRKRKGTE 

       430        440        450        460 
VQVDDIKRVY SLFLDESRST QYMKEYQDAF LFNELKGETM DTS 

« Hide

References

« Hide 'large scale' references
[1]"Isolation, molecular characterization, and tissue-specific expression of ECP-51 and ECP-54 (TIP49), two homologous, interacting erythroid cytosolic proteins."
Salzer U., Kubicek M., Prohaska R.
Biochim. Biophys. Acta 1446:365-370(1999) [PubMed: 10524211] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 72-83; 131-144; 212-223; 369-372 AND 440-457.
Tissue: Bone marrow.
[2]"TIP49b, a new RuvB-like DNA helicase, is included in a complex together with another RuvB-like DNA helicase, TIP49a."
Kanemaki M., Kurokawa Y., Matsu-ura T., Makino Y., Masani A., Okazaki K., Morishita T., Tamura T.-A.
J. Biol. Chem. 274:22437-22444(1999) [PubMed: 10428817] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, INTERACTION WITH RUVBL1.
Tissue: Liver.
[3]"Human TIP49b/RUVBL2 gene: genomic structure, expression pattern, physical link to the human CGB/LHB gene cluster on chromosome 19q13.3."
Parfait B., Giovangrandi Y., Asheuer M., Laurendeau I., Olivi M., Vodovar N., Vidaud D., Vidaud M., Bieche I.
Ann. Genet. 43:69-74(2000) [PubMed: 10998447] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Mammary gland.
[4]"Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity."
Bauer A., Chauvet S., Huber O., Usseglio F., Rothbaecher U., Aragnol D., Kemler R., Pradel J.
EMBO J. 19:6121-6130(2000) [PubMed: 11080158] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Fetal liver.
[5]"An ATPase/helicase complex is an essential cofactor for oncogenic transformation by c-Myc."
Wood M.A., McMahon S.B., Cole M.D.
Mol. Cell 5:321-330(2000) [PubMed: 10882073] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 73-83; 116-124; 237-253 AND 254-269, INTERACTION WITH MYC.
[6]"Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics."
Lai C.-H., Chou C.-Y., Ch'ang L.-Y., Liu C.-S., Lin W.-C.
Genome Res. 10:703-713(2000) [PubMed: 10810093] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[7]"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs."
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. expand/collapse author list , Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.
Genome Res. 11:422-435(2001) [PubMed: 11230166] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis.
[8]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Embryo.
[9]"Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[10]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Colon and Lung.
[11]"Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides."
Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J.
Nat. Biotechnol. 21:566-569(2003) [PubMed: 12665801] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-14.
Tissue: Platelet.
[12]Bienvenut W.V., Heiserich L., Gottlieb E.
Submitted (MAR-2008) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 2-18; 30-53; 55-64; 72-83; 116-124; 165-177; 237-269; 335-368; 393-400 AND 418-438, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ALA-2, MASS SPECTROMETRY.
Tissue: Colon carcinoma.
[13]"Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis."
Ikura T., Ogryzko V.V., Grigoriev M., Groisman R., Wang J., Horikoshi M., Scully R., Qin J., Nakatani Y.
Cell 102:463-473(2000) [PubMed: 10966108] [Abstract]
Cited for: PROTEIN SEQUENCE OF 30-40; 185-197; 354-365 AND 417-427, IDENTIFICATION IN THE NUA4 COMPLEX, MASS SPECTROMETRY.
[14]"Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex."
Cai Y., Jin J., Tomomori-Sato C., Sato S., Sorokina I., Parmely T.J., Conaway R.C., Conaway J.W.
J. Biol. Chem. 278:42733-42736(2003) [PubMed: 12963728] [Abstract]
Cited for: PROTEIN SEQUENCE OF 30-40; 72-83; 165-177; 187-197; 254-269; 354-365; 418-438 AND 445-463, IDENTIFICATION IN NUA4 COMPLEX, MASS SPECTROMETRY.
[15]"TIP49b, a regulator of activating transcription factor 2 response to stress and DNA damage."
Cho S.-G., Bhoumik A., Broday L., Ivanov V., Rosenstein B., Ronai Z.
Mol. Cell. Biol. 21:8398-8413(2001) [PubMed: 11713276] [Abstract]
Cited for: INTERACTION WITH ATF2.
[16]"Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans."
Doyon Y., Selleck W., Lane W.S., Tan S., Cote J.
Mol. Cell. Biol. 24:1884-1896(2004) [PubMed: 14966270] [Abstract]
Cited for: FUNCTION, IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN NUA4 COMPLEX, IDENTIFICATION IN A NUA4-RELATED SRCAP-CONTAINING COMPLEX.
[17]"A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex."
Jin J., Cai Y., Yao T., Gottschalk A.J., Florens L., Swanson S.K., Gutierrez J.L., Coleman M.K., Workman J.L., Mushegian A., Washburn M.P., Conaway R.C., Conaway J.W.
J. Biol. Chem. 280:41207-41212(2005) [PubMed: 16230350] [Abstract]
Cited for: IDENTIFICATION IN INO80 COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
[18]"ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage."
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.
Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-220, MASS SPECTROMETRY.
[19]"Transcriptional activation of histone genes requires NPAT-dependent recruitment of TRRAP-Tip60 complex to histone promoters during the G1/S phase transition."
DeRan M., Pulvino M., Greene E., Su C., Zhao J.
Mol. Cell. Biol. 28:435-447(2008) [PubMed: 17967892] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY, INTERACTION WITH NPAT.
[20]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[21]"Solution structure of RSGI ruh-039, a fragment of C-terminal domain of RuvB-like 2 from human cDNA."
Mycobacterium tuberculosis structural genomics consortium (TB)
Submitted (NOV-2005) to the PDB data bank
Cited for: STRUCTURE BY NMR OF 132-213.
+Additional computationally mapped references.

Cross-references

Sequence databases

Y18417 mRNA. Translation: CAB46270.1.
AB024301 mRNA. Translation: BAA76708.1.
AF155138 mRNA. Translation: AAD38073.1.
AF124607 mRNA. Translation: AAF87087.1.
AF151804 mRNA. Translation: AAD34041.1. Frameshift.
AL136743 mRNA. Translation: CAB66677.1.
AK074542 mRNA. Translation: BAC11048.1.
CR533507 mRNA. Translation: CAG38538.1.
BC000428 mRNA. Translation: AAH00428.1.
BC004531 mRNA. Translation: AAH04531.1.
BC008355 mRNA. Translation: AAH08355.1. Frameshift.
IPIIPI00009104.
PIRT46313.
RefSeqNP_006657.1.
UniGeneHs.515846

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
2CQANMR-A132-212[»]
ModBaseSearch...

Protein-protein interaction databases

DIPDIP:28153N.
IntActQ9Y230. 74 interactions.

PTM databases

PhosphoSiteQ9Y230.

2-D gel databases

REPRODUCTION-2DPAGEIPI00009104.

Proteomic databases

PeptideAtlasQ9Y230.
PRIDEQ9Y230.

Genome annotation databases

EnsemblENSG00000183207. Homo sapiens. [Contig view]
GeneID10856.
KEGGhsa:10856.
UCSCuc002plr.1. human.

Organism-specific databases

GeneCardsGC19P054188.
H-InvDBHIX0015312.
HGNCHGNC:10475. RUVBL2.
HPACAB012432.
MIM604788. gene.
PharmGKBPA34888.
GenAtlasSearch...

Phylogenomic databases

HOGENOMQ9Y230.
HOVERGENQ9Y230.
OMAQ9Y230. TTDMETI.

Gene expression databases

BgeeQ9Y230.
CleanExHS_RUVBL2.
GermOnlineENSG00000183207. Homo sapiens.

Family and domain databases

InterProIPR003593. ATPase_AAA+_core.
IPR003959. ATPase_AAA_core.
IPR004504. DNA_repair_RadA.
IPR010339. TIP49_C.
[Graphical view]
PfamPF00004. AAA. 1 hit.
PF06068. TIP49. 1 hit.
[Graphical view]
PRINTSPR01874. DNAREPAIRADA.
SMARTSM00382. AAA. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio41211.
SOURCESearch...

Entry information

Entry nameRUVB2_HUMAN
AccessionPrimary (citable) accession number: Q9Y230
Secondary accession number(s): Q6FIB9, Q6PK27, Q9Y361
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 2003
Last sequence update: January 23, 2007
Last modified: July 7, 2009
This is version 105 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 19

Human chromosome 19: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents