Unreviewed, UniProtKB/TrEMBL Q9XUQ4 (Q9XUQ4_CAEEL)

Names and origin

Protein names

Submitted name:
    Protein T08G5.5a, confirmed by transcript evidence EMBL CAB04720.1

Gene names

Name:	vps-39 WormBase WBGene00011625
ORF Names:	T08G5.5 WormPep T08G5.5a, T08G5.5a EMBL CAB04720.1

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	923 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct small GTPase regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	P55326	1	EBI-318975,EBI-318604
asah-1	O45686	1	EBI-318975,EBI-324508
gad-1	O16519	1	EBI-318975,EBI-327317
ptl-1	Q95QG4	1	EBI-318975,EBI-321910
trp-2	O44872	1	EBI-318975,EBI-312025

Sequences

	Sequence		Length	Mass (Da)
	Q9XUQ4-1 [UniParc]. Last modified November 1, 1999. Version 1. Checksum: 34BF7C0AB207F676	FASTA	923	104,950
	10 20 30 40 50 60 MYDAYTPCEV ALRLPVEVTC LAFQESNQTL LAGGRAGHLY AYTISANRRG FELTNICKSF 70 80 90 100 110 120 HKKAVMELKV CQREDLLLCV SDGQLMAHKL SDPEYKVETL IHKVKPVQTF ARFSPKTSGD 130 140 150 160 170 180 LYVIVSSRKK LYLFKWGEKD GHKEFIEVAL DYNPVFLDTP TSIRCVGEMV FFSVRNEYFS 190 200 210 220 230 240 MTMQKDKTTT SPSEGSTPEG WNGFVTRLLN FNCQPGIVPM IDRRRVAFVR NEIVVTTDIW 250 260 270 280 290 300 GQRPANVLSD EYKFSEVPMQ IVYDSPYLVG MLSKGRVEVR SIFDGQLVQT MSLPKAMTLC 310 320 330 340 350 360 SGARGQVFVA ALSDIWILDT SQNLRKNVSH LIQERHFELA IQLAENSNLF AEEQKLEIKK 370 380 390 400 410 420 KAALNLFNQK KFDESFALFG EIKTDISEVL SIIRMFPELL PDGFQSMTGV VSDMPANDRM 430 440 450 460 470 480 RALLALGSYL SEIRTEHAKH IELYNRLYSS GAAKKTDEDE KAKLLLTLRV VDTTLLKCYI 490 500 510 520 530 540 KTKPMLVDSL IRLQSNACTF EDAKKILESE GRLRSLFILY ETRKKHEMAL DLFIDQSSRP 550 560 570 580 590 600 DADPFFDDAI QQIVEYLQSL GNSNLPLILK YAKWVLAKNL EAGVQIFTSD ETEMARNLNR 610 620 630 640 650 660 KAVVEFLKSE CPDALIPYLE HVIFKWEEPS SYFHETLLEF YVARVNTLFK DYVHAFPDDE 670 680 690 700 710 720 NITRAGDEDG ELGLYRKRLL KFLEVSHSYS PQTVLLQLAP HAFYEERALI LGRLKQHEQA 730 740 750 760 770 780 LAIYVNTLKN VPAAEEYCRL YYNAHDETNS QVYLMLFRTL VHPNQQQLHS IPYHADSTPF 790 800 810 820 830 840 GSYRDDVSEA STLVNSTSSY QPDVNTAIKI LAKHADKIDT VGALNMLPAT TPLRVVFSAI 850 860 870 880 890 900 NAVIQTTGRQ ASTRKMEKSV SQCAMSKKLE RKNKAQSTKI IVNFSSECVV CEKKIAVSAF 910 920 VRYPDGRLAH LYCHNDSQGG NRN

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z81589 Genomic DNA. Translation: CAB04720.1.
PIR	T24712.
RefSeq	NP_001041163.1.
UniGene	Cel.16926
3D structure databases
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:24817N.
IntAct	Q9XUQ4. 11 interactions.
STRING	Q9XUQ4.
Genome annotation databases
Ensembl	T08G5.5a; T08G5.5a; T08G5.5; Caenorhabditis elegans. [Genome view]
GeneID	179902.
KEGG	cel:T08G5.5.
NMPDR	fig|6239.3.peg.20473.
UCSC	T08G5.5b. c. elegans.
Organism-specific databases
CTD	179902.
WormBase	WBGene00011625. vps-39.
WormPep	T08G5.5a. CE18946. [WorfDB]
Phylogenomic databases
PhylomeDB	Q9XUQ4.
Gene expression databases
ArrayExpress	Q9XUQ4.
Family and domain databases
InterPro	IPR001180. Citron. IPR019452. Vps39/TGF_beta_rcpt-assoc_1. IPR019453. Vps39/TGF_beta_rcpt-assoc_2. IPR011046. WD40_repeat-like_dom. [Graphical view]
Pfam	PF00780. CNH. 1 hit. PF10366. Vps39_1. 1 hit. PF10367. Vps39_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	907334.

Entry information

Entry name

Q9XUQ4_CAEEL

Accession

Primary (citable) accession number: Q9XUQ4

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1999
Last sequence update:	November 1, 1999
Last modified:	November 24, 2009
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)