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Q9XHY7

- HACL3_ORYSJ

UniProt

Q9XHY7 - HACL3_ORYSJ

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Protein
Probable histone acetyltransferase HAC-like 3
Gene
Os01g0246100, LOC_Os01g14370, OSJNBa0004G10.16, OSJNBa0049B20.5
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation By similarity.

Catalytic activityi

Acetyl-CoA + [histone] = CoA + acetyl-[histone].

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri621 – 68969PHD-type
Add
BLAST
Zinc fingeri1012 – 105948ZZ-type 1
Add
BLAST
Zinc fingeri1124 – 117148ZZ-type 2
Add
BLAST
Zinc fingeri1177 – 126084TAZ-type
Add
BLAST

GO - Molecular functioni

  1. histone acetyltransferase activity Source: UniProtKB-EC
  2. transcription cofactor activity Source: InterPro
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator, Acyltransferase, Chromatin regulator, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Probable histone acetyltransferase HAC-like 3 (EC:2.3.1.48)
Gene namesi
Ordered Locus Names:Os01g0246100, LOC_Os01g14370
ORF Names:OSJNBa0004G10.16, OSJNBa0049B20.5
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Organism-specific databases

GrameneiQ9XHY7.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12761276Probable histone acetyltransferase HAC-like 3
PRO_0000269747Add
BLAST

Proteomic databases

PRIDEiQ9XHY7.

Structurei

3D structure databases

ProteinModelPortaliQ9XHY7.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili953 – 97321 Reviewed prediction
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi234 – 24714Ser-rich
Add
BLAST
Compositional biasi1130 – 115728Cys-rich
Add
BLAST

Sequence similaritiesi

Contains 2 ZZ-type zinc fingers.

Keywords - Domaini

Coiled coil, Repeat, Zinc-finger

Phylogenomic databases

eggNOGiNOG308586.
HOGENOMiHOG000082957.
KOiK04498.

Family and domain databases

Gene3Di1.20.1020.10. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR013178. Histone_H3-K56_AcTrfase_RTT109.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR013083. Znf_RING/FYVE/PHD.
IPR000197. Znf_TAZ.
IPR000433. Znf_ZZ.
[Graphical view]
PfamiPF08214. KAT11. 1 hit.
PF02135. zf-TAZ. 1 hit.
[Graphical view]
SMARTiSM00249. PHD. 1 hit.
SM00291. ZnF_ZZ. 1 hit.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 1 hit.
SSF57933. SSF57933. 1 hit.
PROSITEiPS01359. ZF_PHD_1. 1 hit.
PS50134. ZF_TAZ. 1 hit.
PS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9XHY7-1 [UniParc]FASTAAdd to Basket

« Hide

MMAKTLQGTQ QQYAASGFPT QQYPTSGWTQ SAAEILQLDN MDQDTSVVRN     50
IIHRKIVEYL NERKEFCNFD LSFLMEIGKC IDRHLFEKAD SKIKYMDLET 100
LRTRLNAIVN SASFRGSMFH WSASAASSKL NSQQLPVMEV PIYHDRVTPG 150
PNNLPSCAYN VSSTQGYNQY ENCMGAANFA HSLADKPKQM PERLANTIFT 200
SCASTLPKCS PSIDVLHIGH IKEHFSGDAY QNDSSQPSTS GSSSSLSAVW 250
DQTTCSSAMR TLPMDSFSTV NGQNLSTNNK SLYPTTGQGP LLQQYIECEM 300
KQETWSRSLE QSDQSNITTG NRDLYHAQIH PYINGEHKRD RCIQMKEKLG 350
HTSDHEGFSR EKSSNLSNHF MHHQQGFMTN YGACSPVSKT VDRAEQTSNS 400
TVSKPTSPAS DGSSGKHYPA KRLKVDVPHL VHVNEMEASK EQQPAANETY 450
ASAETVQSEV TNSPTKSPCC TSLGDNIACT DNVHGMDMVR LSGSAVQTEE 500
EFRRENSDIE MKDAKVDLLD QTLSGDSLRA RKRRGASVLY ALTSEELKDH 550
LCTLNHDTSQ SKVPTEELLS VEGLPDQNTC NLCGMERLLF EPPPRFCALC 600
FKIINSTGSY YVEVENGNDK SSICGRCHHL SSAKAKYQKR FSYAETDAEA 650
EWWVQCDKCK AWQHQICALF NPKIVDPEAE YTCAKCFLKE KDNEDVDSLE 700
PSTILGAREL PRTRLSDHIE QRLSERLVQE RQQRAIASGK SVDEVPGVEG 750
LTVRVVSSAD RTLQVQPRFK DFFKKEQYPG EFPYKSKAIL LFQKNEGVDV 800
CLFAMYVQEY GSACPSPNQR HVYLAYIDSV KYFRPEIKSA SGEALRTFVY 850
HEILIGYLDF CKKRGFVSCS IWTCPSTKRD DYVLYCHPTI QKMPKSDKLR 900
SWYQNLVKKA VKEGVVVERN TLYDFFLQPT NECKTNISAA WLPYCDNDFW 950
PGEAERLLEK KDDDTSQKKE TQLGRLLRVA KRDDRKGNLE DILLVHKLGE 1000
RLRTMKEDFL MLCLQQFCKH CHHPIVSGSS WVCTSCKNFF LCERCYAEEL 1050
NTPLKDRHPA TTKQKHAFER IEEEPLPETD DVDPTMESKY FDSRIDFLKH 1100
CQDNQYQFDT LRRAKHSTMM ILYHLHDSTC SSCHRAMDQC LAWRCLVCLG 1150
CNFCDSCYKQ DGESLHIHKL RQKKDHHVLQ KYTLQDYLEG LVHASRCFDR 1200
SCTSKLCLTL KKLFFHGVRC HTRARGGGGC HMCVFMWKLL FTHSLLCDNA 1250
DCSAPRCRDI KAYIADRSMT DLSISG 1276
Length:1,276
Mass (Da):145,098
Last modified:January 9, 2007 - v2
Checksum:i902E2A329079778E
GO

Sequence cautioni

The sequence BAE95818.1 differs from that shown. Reason: Erroneous initiation.
The sequence AAD38279.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti468 – 4681P → Q1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC007789 Genomic DNA. Translation: AAD38279.1. Sequence problems.
AP003074 Genomic DNA. Translation: BAE95818.1. Different initiation.
AP008207 Genomic DNA. Translation: BAF04486.1.
AK120732 mRNA. No translation available.
RefSeqiNP_001042572.1. NM_001049107.1.
UniGeneiOs.15122.

Genome annotation databases

EnsemblPlantsiOS01T0246100-01; OS01T0246100-01; OS01G0246100.
GeneIDi4326755.
KEGGiosa:4326755.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC007789 Genomic DNA. Translation: AAD38279.1 . Sequence problems.
AP003074 Genomic DNA. Translation: BAE95818.1 . Different initiation.
AP008207 Genomic DNA. Translation: BAF04486.1 .
AK120732 mRNA. No translation available.
RefSeqi NP_001042572.1. NM_001049107.1.
UniGenei Os.15122.

3D structure databases

ProteinModelPortali Q9XHY7.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q9XHY7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS01T0246100-01 ; OS01T0246100-01 ; OS01G0246100 .
GeneIDi 4326755.
KEGGi osa:4326755.

Organism-specific databases

Gramenei Q9XHY7.

Phylogenomic databases

eggNOGi NOG308586.
HOGENOMi HOG000082957.
KOi K04498.

Family and domain databases

Gene3Di 1.20.1020.10. 1 hit.
3.30.40.10. 1 hit.
InterProi IPR013178. Histone_H3-K56_AcTrfase_RTT109.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR013083. Znf_RING/FYVE/PHD.
IPR000197. Znf_TAZ.
IPR000433. Znf_ZZ.
[Graphical view ]
Pfami PF08214. KAT11. 1 hit.
PF02135. zf-TAZ. 1 hit.
[Graphical view ]
SMARTi SM00249. PHD. 1 hit.
SM00291. ZnF_ZZ. 1 hit.
[Graphical view ]
SUPFAMi SSF57903. SSF57903. 1 hit.
SSF57933. SSF57933. 1 hit.
PROSITEi PS01359. ZF_PHD_1. 1 hit.
PS50134. ZF_TAZ. 1 hit.
PS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiHACL3_ORYSJ
AccessioniPrimary (citable) accession number: Q9XHY7
Secondary accession number(s): Q0JP42, Q1EHS1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: January 9, 2007
Last modified: May 14, 2014
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

It is uncertain whether Met-1 or Met-2 is the initiator.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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