Q9XFR5 (Q9XFR5_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative SF2/ASF splicing modulator Srp30 EMBL AAN13011.1

Submitted name:
SF2/ASF-like splicing modulator Srp30 EMBL CAB42557.1
Submitted name:
Splicing factor, arginine/serine-rich 1/9 EMBL AEE28400.1

Gene names

Name:	srp30 EMBL CAB42557.1
Synonyms:	ATSRP30 EMBL AEE28400.1
Ordered Locus Names:	AT1G09140 EMBL AEE28400.1, At1g09140 TAIR At1g09140

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome] EMBL CAB42557.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	268 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	mRNA splice site selection Inferred from mutant phenotype Ref.1. Source: TAIR regulation of mRNA splicing, via spliceosome Traceable author statement Ref.1. Source: TAIR
Cellular_component	interchromatin granule Inferred from direct assay PubMed 15034145. Source: TAIR nuclear speck Inferred from direct assay PubMed 15133128. Source: TAIR
Molecular_function	mRNA binding Inferred from sequence or structural similarity Ref.1. Source: TAIR nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
MAA21_30	Q9LY75	4	EBI-1540237,EBI-2360522

Sequences

	Sequence		Length	Mass (Da)
	Q9XFR5 [UniParc]. Last modified November 1, 1999. Version 1. Checksum: 73BDC3534A8F9AC4	FASTA	268	30,386
	10 20 30 40 50 60 MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD 70 80 90 100 110 120 AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS RAPSRRSDYR VLVTGLPPSA 130 140 150 160 170 180 SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI 190 200 210 220 230 240 RVREYESRSV SRSPDDSKSY RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY 250 260 SSVSRSQSRS KSRSRSRSNS PVSPVISG

References

[1]	"atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes." Lopato S., Kalyna M., Dorner S., Kobayashi R., Krainer A.R., Barta A. Genes Dev. 13:987-1001(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Arabidopsis Open Reading Frame (ORF) Clones." Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Quach H.L., Tang C.C., Toriumi M., Wallender E.K., Wong C., Wu H.C., Yu G., Yuan S., Chen H., Cheuk R., Jones T., Kim C.J. , Nguyen M., Palm C.J., Shinn P., Southwick A., Tripp M.G., Wu T., Davis R.W., Ecker J.R., Theologis A. Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	TAIR Swarbreck D., Lamesch P., Wilks C., Huala E. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY150486 mRNA. Translation: AAN13011.1. CP002684 Genomic DNA. Translation: AEE28400.1. AJ131214 Genomic DNA. Translation: CAB42557.1.
IPI	IPI00520604.
RefSeq	NP_172386.3. NM_100783.5.
UniGene	At.419.
3D structure databases
SMR	Q9XFR5. Positions 9-183.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9XFR5. 13 interactions.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G09140.1; AT1G09140.1; AT1G09140.
GeneID	837433.
KEGG	ath:AT1G09140.
Organism-specific databases
TAIR	At1g09140.
Phylogenomic databases
HOGENOM	HOG000276234.
InParanoid	Q9XFR5.
KO	K12890.
OMA	YKLRVEH.
ProtClustDB	CLSN2918467.
Gene expression databases
Genevestigator	Q9XFR5.
Family and domain databases
Gene3D	3.30.70.330. 2 hits.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Pfam	PF00076. RRM_1. 2 hits. [Graphical view]
SMART	SM00360. RRM. 2 hits. [Graphical view]
PROSITE	PS50102. RRM. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9XFR5_ARATH

Accession

Primary (citable) accession number: Q9XFR5

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1999
Last sequence update:	November 1, 1999
Last modified:	May 29, 2013
This is version 101 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)