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Q9XFR5 (Q9XFR5_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 111. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

SF2/ASF-like splicing modulator Srp30 EMBL CAB42557.1

Serine-arginine rich RNA binding protein EMBL AEE28400.1
Gene names
Name:srp30 EMBL CAB42557.1
Synonyms:ATSRP30 EMBL AEE28400.1
Ordered Locus Names:AT1G09140 EMBL AEE28400.1, At1g09140 TAIR AT1G09140
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome] EMBL CAB42557.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length268 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Binary interactions

With

Entry

#Exp.

IntAct

Notes

MAA21_30Q9LY754EBI-1540237,EBI-2360522

Sequences

Sequence LengthMass (Da)Tools
Q9XFR5 [UniParc].

Last modified November 1, 1999. Version 1.
Checksum: 73BDC3534A8F9AC4

FASTA26830,386
        10         20         30         40         50         60 
MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD 

        70         80         90        100        110        120 
AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS RAPSRRSDYR VLVTGLPPSA 

       130        140        150        160        170        180 
SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI 

       190        200        210        220        230        240 
RVREYESRSV SRSPDDSKSY RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY 

       250        260 
SSVSRSQSRS KSRSRSRSNS PVSPVISG 

« Hide

References

« Hide 'large scale' references
[1]"atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes."
Lopato S., Kalyna M., Dorner S., Kobayashi R., Krainer A.R., Barta A.
Genes Dev. 13:987-1001(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Quach H.L., Tang C.C., Toriumi M., Wallender E.K., Wong C., Wu H.C., Yu G., Yuan S., Chen H., Cheuk R., Jones T., Kim C.J. expand/collapse author list , Nguyen M., Palm C.J., Shinn P., Southwick A., Tripp M.G., Wu T., Davis R.W., Ecker J.R., Theologis A.
Submitted (SEP-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY150486 mRNA. Translation: AAN13011.1.
CP002684 Genomic DNA. Translation: AEE28400.1.
AJ131214 Genomic DNA. Translation: CAB42557.1.
RefSeqNP_172386.3. NM_100783.5.
UniGeneAt.419.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G09140.1; AT1G09140.1; AT1G09140.
GeneID837433.
KEGGath:AT1G09140.

Organism-specific databases

TAIRAT1G09140.
At1g09140.

Phylogenomic databases

HOGENOMHOG000276234.
InParanoidQ9XFR5.
KOK12890.
OMARSHESRS.
ProtClustDBCLSN2918467.

Gene expression databases

GenevestigatorQ9XFR5.

Family and domain databases

Gene3D3.30.70.330. 2 hits.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTSM00360. RRM. 2 hits.
[Graphical view]
PROSITEPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9XFR5_ARATH
AccessionPrimary (citable) accession number: Q9XFR5
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: April 16, 2014
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)