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Protein
Submitted name:

Pectate lyase

Gene

pelA

Organism
Niveispirillum irakense (Azospirillum irakense)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei172 – 1721SubstrateCombined sources
Active sitei307 – 3071Proton donor/acceptorCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Protein family/group databases

CAZyiPL10. Polysaccharide Lyase Family 10.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyaseImported
Gene namesi
Name:pelAImported
OrganismiNiveispirillum irakense (Azospirillum irakense)Imported
Taxonomic identifieri34011 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeNiveispirillum

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1R76X-ray2.65A25-432[»]
ProteinModelPortaliQ9X592.
SMRiQ9X592. Positions 25-432.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9X592.

Family & Domainsi

Family and domain databases

Gene3Di1.50.10.20. 1 hit.
InterProiIPR012669. Pectate_lyase.
IPR008930. Terpenoid_cyclase/PrenylTrfase.
[Graphical view]
PfamiPF09492. Pec_lyase. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02474. pec_lyase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9X592-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRIALLIPL FASNLLIPAT VASAAVIGMN EAASALTPSR VSSLPDTQRA
60 70 80 90 100
AWQEYLARSE AQLSRDKASL AAELAPGQPL PPPPAEGKGA DTMPLDKPAA
110 120 130 140 150
WYTSKAARHV ADVIVSFQTP AGGWGKNQPR DGALRLPGQH YTGENVAKVK
160 170 180 190 200
SGSNDLDAAR DRDWHYVGTI DNDATVTEIR FLAQVVSQLA PEEAAPYRDA
210 220 230 240 250
ALKGIEYLLA SQFPNGGWPQ VWPLEGGYHD AITYNDDALV HVAELLSDIA
260 270 280 290 300
AGRDGFGFVP PAIRTRALEA TNAAIHCIVE TQVVQDGKRL GWGQQHDALT
310 320 330 340 350
LRPTSARNFE PAALSSTESA RILLFLMEIE APSDAVKQAI RGGVAWLNTS
360 370 380 390 400
VIRDRAWVKS DQGYQLVTEQ GAKPLWSRFY SLDGNKPVFG DRDKTIHDDV
410 420 430
MGISQERRTG YAWYTTSPQK ALSAFTKWEK RS
Length:432
Mass (Da):47,007
Last modified:November 1, 1999 - v1
Checksum:iA9E0F8D7ED0F2490
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF121904 Genomic DNA. Translation: AAD25394.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF121904 Genomic DNA. Translation: AAD25394.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1R76X-ray2.65A25-432[»]
ProteinModelPortaliQ9X592.
SMRiQ9X592. Positions 25-432.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL10. Polysaccharide Lyase Family 10.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ9X592.

Family and domain databases

Gene3Di1.50.10.20. 1 hit.
InterProiIPR012669. Pectate_lyase.
IPR008930. Terpenoid_cyclase/PrenylTrfase.
[Graphical view]
PfamiPF09492. Pec_lyase. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02474. pec_lyase. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Azospirillum irakense produces a novel type of pectate lyase."
    Bekri M.A., Desair J., Keijers V., Proost P., Searle-van Leeuwen M., Vanderleyden J., Vande Broek A.
    J. Bacteriol. 181:2440-2447(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: KBC1Imported.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (2.65 ANGSTROMS) OF 25-432, ACTIVE SITE.

Entry informationi

Entry nameiQ9X592_NIVIR
AccessioniPrimary (citable) accession number: Q9X592
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.