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Protein
Submitted name:

Naphthalene dioxygenase large subunit

Gene

narAa

Organism
Rhodococcus sp. NCIMB12038
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi88 – 881Iron-sulfur (2Fe-2S)Combined sources
Metal bindingi90 – 901Iron-sulfur (2Fe-2S); via pros nitrogenCombined sources
Metal bindingi91 – 911Iron-sulfur (2Fe-2S); via amide nitrogenCombined sources
Metal bindingi108 – 1081Iron-sulfur (2Fe-2S)Combined sources
Metal bindingi111 – 1111Iron-sulfur (2Fe-2S); via pros nitrogenCombined sources
Metal bindingi216 – 2161Iron; via tele nitrogenCombined sources
Metal bindingi221 – 2211Iron; via tele nitrogenCombined sources
Metal bindingi372 – 3721IronCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DioxygenaseImported, Oxidoreductase

Keywords - Ligandi

2Fe-2SUniRule annotationCombined sources, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Submitted name:
Naphthalene dioxygenase large subunitImported
Gene namesi
Name:narAaImported
OrganismiRhodococcus sp. NCIMB12038Imported
Taxonomic identifieri92694 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesNocardiaceaeRhodococcus

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2B1XX-ray2.00A/C/E1-470[»]
2B24X-ray3.00A/C/E1-470[»]
ProteinModelPortaliQ9X3R9.
SMRiQ9X3R9. Positions 1-441.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9X3R9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini47 – 12983RieskeInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Rieske domain.UniRule annotation

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
3.90.380.10. 1 hit.
InterProiIPR017941. Rieske_2Fe-2S.
IPR015881. Ring-hydroxy_dOase_2Fe2S_BS.
IPR015879. Ring_hydroxy_dOase_asu_C_dom.
IPR001663. Rng_hydr_dOase-A.
[Graphical view]
PfamiPF00355. Rieske. 1 hit.
PF00848. Ring_hydroxyl_A. 1 hit.
[Graphical view]
PRINTSiPR00090. RNGDIOXGNASE.
SUPFAMiSSF50022. SSF50022. 1 hit.
PROSITEiPS51296. RIESKE. 1 hit.
PS00570. RING_HYDROXYL_ALPHA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9X3R9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSNELRQTL QKGLHDVNSD WTVPAAIIND PEVHDVERER IFGHAWVFLA
60 70 80 90 100
HESEIPERGD YVVRYISEDQ FIVCRDEGGE IRGHLNACRH RGMQVCRAEM
110 120 130 140 150
GNTSHFRCPY HGWTYSNTGS LVGVPAGKDA YGNQLKKSDW NLRPMPNLAS
160 170 180 190 200
YKGLIFGSLD PHADSLEDYL GDLKFYLDIV LDRSDAGLQV VGAPQRWVID
210 220 230 240 250
ANWKLGADNF VGDAYHTMMT HRSMVELGLA PPDPQFALYG EHIHTGHGHG
260 270 280 290 300
LGIIGPPPGM PLPEFMGLPE NIVEELERRL TPEQVEIFRP TAFIHGTVFP
310 320 330 340 350
NLSIGNFLMG KDHLSAPTAF LTLRLWHPLG PDKMEVMSFF LVEKDAPDWF
360 370 380 390 400
KDESYKSYLR TFGISGGFEQ DDAENWRSIT RVMGGQFAKT GELNYQMGRG
410 420 430 440 450
VLEPDPNWTG PGEAYPLDYA EANQRNFLEY WMQLMLAESP LRDGNSNGSG
460 470
TADASTPAAA KSKSPAKAEA
Length:470
Mass (Da):52,522
Last modified:November 1, 1999 - v1
Checksum:i7C8B2FEC3DA9BEAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF082663 Genomic DNA. Translation: AAD28100.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF082663 Genomic DNA. Translation: AAD28100.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2B1XX-ray2.00A/C/E1-470[»]
2B24X-ray3.00A/C/E1-470[»]
ProteinModelPortaliQ9X3R9.
SMRiQ9X3R9. Positions 1-441.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ9X3R9.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
3.90.380.10. 1 hit.
InterProiIPR017941. Rieske_2Fe-2S.
IPR015881. Ring-hydroxy_dOase_2Fe2S_BS.
IPR015879. Ring_hydroxy_dOase_asu_C_dom.
IPR001663. Rng_hydr_dOase-A.
[Graphical view]
PfamiPF00355. Rieske. 1 hit.
PF00848. Ring_hydroxyl_A. 1 hit.
[Graphical view]
PRINTSiPR00090. RNGDIOXGNASE.
SUPFAMiSSF50022. SSF50022. 1 hit.
PROSITEiPS51296. RIESKE. 1 hit.
PS00570. RING_HYDROXYL_ALPHA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Purification and characterization of a novel naphthalene dioxygenase from Rhodococcus sp. strain NCIMB12038."
    Larkin M.J., Allen C.C., Kulakov L.A., Lipscomb D.A.
    J. Bacteriol. 181:6200-6204(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NCIMB12038Imported.
  2. "Analysis of the Rhodococcus sp. NCIMB12038 naphthalene degradation genes regions."
    Chen S., Kulakov L.A., Larkin M.J.
    Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NCIMB12038Imported.
  3. "Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase."
    Gakhar L., Malik Z.A., Allen C.C., Lipscomb D.A., Larkin M.J., Ramaswamy S.
    J. Bacteriol. 187:7222-7231(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) IN COMPLEX WITH IRON AND IRON-SULFUR (2FE-2S).

Entry informationi

Entry nameiQ9X3R9_9NOCA
AccessioniPrimary (citable) accession number: Q9X3R9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: March 16, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.