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Protein
Submitted name:

Transcriptional regulator, MarR family

Gene

TM_0816

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-843-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, MarR familyImported
Submitted name:
Transcriptional regulator, putative, Mar familyImported
Gene namesi
Ordered Locus Names:TM_0816Imported
ORF Names:Tmari_0817Imported
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Imported
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000013901 Componenti: Chromosome
  • UP000008183 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0816.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ETHX-ray2.30A/B1-142[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 135133HTH marR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 3 HTH marR-type DNA-binding domains.UniRule annotation

Phylogenomic databases

eggNOGiENOG41083H6. Bacteria.
COG1846. LUCA.
OMAiLAGICED.
OrthoDBiEOG6PS5VV.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR023187. Tscrpt_reg_MarR-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS01117. HTH_MARR_1. 1 hit.
PS50995. HTH_MARR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WZS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDALEIFKTL FSLVMRFSSY LPSNEEISDM KTTELYAFLY VALFGPKKMK
60 70 80 90 100
EIAEFLSTTK SNVTNVVDSL EKRGLVVREM DPVDRRTYRV VLTEKGKEIF
110 120 130 140
GEILSNFESL LKSVLEKFSE EDFKVVSEGF NRMVEALSRE GR
Length:142
Mass (Da):16,387
Last modified:November 1, 1999 - v1
Checksum:i0D36B87FD206C0DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35898.1.
CP004077 Genomic DNA. Translation: AGL49742.1.
PIRiC72329.
RefSeqiNP_228625.1. NC_000853.1.
WP_004080846.1. NZ_CP011107.1.

Genome annotation databases

EnsemblBacteriaiAAD35898; AAD35898; TM_0816.
AGL49742; AGL49742; Tmari_0817.
GeneIDi898484.
KEGGitma:TM0816.
tmi:THEMA_00570.
tmm:Tmari_0817.
tmw:THMA_0835.
PATRICi23936552. VBITheMar51294_0828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35898.1.
CP004077 Genomic DNA. Translation: AGL49742.1.
PIRiC72329.
RefSeqiNP_228625.1. NC_000853.1.
WP_004080846.1. NZ_CP011107.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ETHX-ray2.30A/B1-142[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0816.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35898; AAD35898; TM_0816.
AGL49742; AGL49742; Tmari_0817.
GeneIDi898484.
KEGGitma:TM0816.
tmi:THEMA_00570.
tmm:Tmari_0817.
tmw:THMA_0835.
PATRICi23936552. VBITheMar51294_0828.

Phylogenomic databases

eggNOGiENOG41083H6. Bacteria.
COG1846. LUCA.
OMAiLAGICED.
OrthoDBiEOG6PS5VV.

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-843-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR023187. Tscrpt_reg_MarR-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01047. MarR. 1 hit.
[Graphical view]
PRINTSiPR00598. HTHMARR.
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS01117. HTH_MARR_1. 1 hit.
PS50995. HTH_MARR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099Imported and MSB8Imported.
  2. "The genome organization of Thermotoga maritima reflects its lifestyle."
    Latif H., Lerman J.A., Portnoy V.A., Tarasova Y., Nagarajan H., Schrimpe-Rutledge A.C., Smith R.D., Adkins J.N., Lee D.H., Qiu Y., Zengler K.
    PLoS Genet. 9:E1003485-E1003485(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099Imported and MSB8Imported.

Entry informationi

Entry nameiQ9WZS3_THEMA
AccessioniPrimary (citable) accession number: Q9WZS3
Secondary accession number(s): G4FD08
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: March 16, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.