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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds together with S18 to 16S ribosomal RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Gene namesi
Name:rpsF
Ordered Locus Names:TM_0603
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000008183 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12812830S ribosomal protein S6PRO_0000176861Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0603.

Structurei

Secondary structure

1
128
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi7 – 159Combined sources
Helixi21 – 3717Combined sources
Beta strandi42 – 5817Combined sources
Beta strandi61 – 7313Combined sources
Beta strandi75 – 773Combined sources
Helixi79 – 868Combined sources
Beta strandi91 – 988Combined sources
Helixi100 – 11011Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VMBX-ray1.70A1-128[»]
ProteinModelPortaliQ9WZ72.
SMRiQ9WZ72. Positions 5-111.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9WZ72.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6P family.Curated

Phylogenomic databases

eggNOGiENOG41083EQ. Bacteria.
COG0360. LUCA.
InParanoidiQ9WZ72.
KOiK02990.
OMAiIDKVERM.
OrthoDBiEOG6P33DH.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9WZ72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYVKERIYE SMFIIAPNVP EEERENLVER VKKIIEERVK GKIDKVERMG
60 70 80 90 100
MRKFAYEIKK FNEGDYTVIY FRCDGQNLQE LENFYRVTPE IIRWQTFRRF
110 120
DLEKKERKAQ REKAAAEATE SSEGGSED
Length:128
Mass (Da):15,369
Last modified:November 1, 1999 - v1
Checksum:iA151E99D8BFF7A48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35688.1.
PIRiG72354.
RefSeqiNP_228413.1. NC_000853.1.
WP_004081227.1. NZ_CP011107.1.

Genome annotation databases

EnsemblBacteriaiAAD35688; AAD35688; TM_0603.
GeneIDi897684.
KEGGitma:TM0603.
PATRICi23936121. VBITheMar51294_0614.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35688.1.
PIRiG72354.
RefSeqiNP_228413.1. NC_000853.1.
WP_004081227.1. NZ_CP011107.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VMBX-ray1.70A1-128[»]
ProteinModelPortaliQ9WZ72.
SMRiQ9WZ72. Positions 5-111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0603.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35688; AAD35688; TM_0603.
GeneIDi897684.
KEGGitma:TM0603.
PATRICi23936121. VBITheMar51294_0614.

Phylogenomic databases

eggNOGiENOG41083EQ. Bacteria.
COG0360. LUCA.
InParanoidiQ9WZ72.
KOiK02990.
OMAiIDKVERM.
OrthoDBiEOG6P33DH.

Miscellaneous databases

EvolutionaryTraceiQ9WZ72.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.

Entry informationi

Entry nameiRS6_THEMA
AccessioniPrimary (citable) accession number: Q9WZ72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1999
Last modified: April 13, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.