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Protein

Uncharacterized ABC transporter ATP-binding protein TM_0288

Gene

TM_0288

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi388 – 3958ATPPROSITE-ProRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Protein family/group databases

TCDBi3.A.1.135.5. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein TM_0288
Gene namesi
Ordered Locus Names:TM_0288
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000008183 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei40 – 6021HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei80 – 10021HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei150 – 17021HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei177 – 19721HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei273 – 29321HelicalPROSITE-ProRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 598598Uncharacterized ABC transporter ATP-binding protein TM_0288PRO_0000093279Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0288.

Structurei

Secondary structure

1
598
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi21 – 288Combined sources
Turni29 – 313Combined sources
Helixi33 – 353Combined sources
Helixi36 – 6631Combined sources
Turni67 – 715Combined sources
Helixi73 – 753Combined sources
Helixi76 – 12247Combined sources
Helixi125 – 1306Combined sources
Helixi133 – 15220Combined sources
Helixi154 – 17522Combined sources
Helixi177 – 1837Combined sources
Helixi186 – 22439Combined sources
Helixi226 – 2316Combined sources
Turni232 – 2343Combined sources
Helixi235 – 25925Combined sources
Turni260 – 2623Combined sources
Helixi263 – 28725Combined sources
Helixi293 – 3019Combined sources
Turni302 – 3065Combined sources
Helixi308 – 33326Combined sources
Beta strandi355 – 3628Combined sources
Beta strandi364 – 3685Combined sources
Beta strandi370 – 3789Combined sources
Beta strandi383 – 3875Combined sources
Helixi394 – 4018Combined sources
Beta strandi408 – 4147Combined sources
Helixi419 – 4213Combined sources
Helixi424 – 4296Combined sources
Beta strandi431 – 4344Combined sources
Beta strandi442 – 4443Combined sources
Helixi445 – 4495Combined sources
Turni450 – 4523Combined sources
Helixi458 – 46710Combined sources
Helixi471 – 4755Combined sources
Helixi480 – 4823Combined sources
Helixi486 – 4894Combined sources
Helixi494 – 50714Combined sources
Beta strandi511 – 5166Combined sources
Beta strandi520 – 5223Combined sources
Helixi524 – 53815Combined sources
Beta strandi541 – 5466Combined sources
Helixi552 – 5554Combined sources
Beta strandi557 – 5637Combined sources
Beta strandi566 – 5716Combined sources
Helixi573 – 5797Combined sources
Helixi582 – 59110Combined sources
Helixi592 – 5965Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3QF4X-ray2.90B1-598[»]
4Q4AX-ray2.60B1-598[»]
4Q4HX-ray2.53B1-598[»]
4Q4JX-ray3.20B1-598[»]
4Q7LX-ray2.35A/B/C353-598[»]
4Q7MX-ray2.30B353-598[»]
ProteinModelPortaliQ9WYC4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 322284ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST
Domaini355 – 589235ABC transporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation
Contains 1 ABC transporter domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
InParanoidiQ9WYC4.
KOiK06147.
OMAiLRNWGWN.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WYC4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPEIRRRPHG PILEKPALKN PTATLRRLLG YLRPHTFTLI MVFVFVTVSS
60 70 80 90 100
ILGVLSPYLI GKTIDVVFVP RRFDLLPRYM LILGTIYALT SLLFWLQGKI
110 120 130 140 150
MLTLSQDVVF RLRKELFEKL QRVPVGFFDR TPHGDIISRV INDVDNINNV
160 170 180 190 200
LGNSIIQFFS GIVTLAGAVI MMFRVNVILS LVTLSIVPLT VLITQIVSSQ
210 220 230 240 250
TRKYFYENQR VLGQLNGIIE EDISGLTVIK LFTREEKEME KFDRVNESLR
260 270 280 290 300
KVGTKAQIFS GVLPPLMNMV NNLGFALISG FGGWLALKDI ITVGTIATFI
310 320 330 340 350
GYSRQFTRPL NELSNQFNMI QMALASAERI FEILDLEEEK DDPDAVELRE
360 370 380 390 400
VRGEIEFKNV WFSYDKKKPV LKDITFHIKP GQKVALVGPT GSGKTTIVNL
410 420 430 440 450
LMRFYDVDRG QILVDGIDIR KIKRSSLRSS IGIVLQDTIL FSTTVKENLK
460 470 480 490 500
YGNPGATDEE IKEAAKLTHS DHFIKHLPEG YETVLTDNGE DLSQGQRQLL
510 520 530 540 550
AITRAFLANP KILILDEATS NVDTKTEKSI QAAMWKLMEG KTSIIIAHRL
560 570 580 590
NTIKNADLII VLRDGEIVEM GKHDELIQKR GFYYELFTSQ YGLVVEKE
Length:598
Mass (Da):67,708
Last modified:November 1, 1999 - v1
Checksum:iBDFA5A242F18393E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35376.1.
PIRiF72396.
RefSeqiNP_228100.1. NC_000853.1.
WP_004083002.1. NZ_CP011107.1.

Genome annotation databases

EnsemblBacteriaiAAD35376; AAD35376; TM_0288.
GeneIDi897208.
KEGGitma:TM0288.
PATRICi23935455. VBITheMar51294_0293.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35376.1.
PIRiF72396.
RefSeqiNP_228100.1. NC_000853.1.
WP_004083002.1. NZ_CP011107.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3QF4X-ray2.90B1-598[»]
4Q4AX-ray2.60B1-598[»]
4Q4HX-ray2.53B1-598[»]
4Q4JX-ray3.20B1-598[»]
4Q7LX-ray2.35A/B/C353-598[»]
4Q7MX-ray2.30B353-598[»]
ProteinModelPortaliQ9WYC4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0288.

Protein family/group databases

TCDBi3.A.1.135.5. the atp-binding cassette (abc) superfamily.

Protocols and materials databases

DNASUi897208.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35376; AAD35376; TM_0288.
GeneIDi897208.
KEGGitma:TM0288.
PATRICi23935455. VBITheMar51294_0293.

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
InParanoidiQ9WYC4.
KOiK06147.
OMAiLRNWGWN.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.

Entry informationi

Entry nameiY288_THEMA
AccessioniPrimary (citable) accession number: Q9WYC4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1999
Last modified: April 13, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.