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Protein

Beta-xylanase

Gene

TM_0070

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-70-MONOMER.

Protein family/group databases

CAZyiGH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Ordered Locus Names:TM_0070Imported
ORF Names:Tmari_0067Imported
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Imported
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000013901 Componenti: Chromosome
  • UP000008183 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0070.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VBRX-ray1.80A/B20-347[»]
1VBUX-ray1.80A/B20-347[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 338320GH10 (glycosyl hydrolase family 10)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG3693. LUCA.
KOiK01181.
OMAiVKAIQFW.
OrthoDBiEOG6XQ3JG.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001000. GH10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WXS5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKILPSVLIL LLGCVPVFSS QNVSLRELAE KLNIYIGFAA INNFWSLSDA
60 70 80 90 100
EKYMEVARRE FNILTPENQM KWDTIHPERD RYNFTPAEKH VEFAEENDMI
110 120 130 140 150
VHGHTLVWHN QLPGWITGRE WTKEELLNVL EDHIKTVVSH FKGRVKIWDV
160 170 180 190 200
VNEAVSDSGT YRESVWYKTI GPEYIEKAFR WAKEADPDAI LIYNDYSIEE
210 220 230 240 250
INAKSNFVYN MIKELKEKGV PVDGIGFQMH IDYRGLNYDS FRRNLERFAK
260 270 280 290 300
LGLQIYITEM DVRIPLSGSE EYYLKKQAEV CAKIFDICLD NPAVKAIQFW
310 320 330 340
GFTDKYSWVP GFFKGYGKAL LFDENYNPKP CYYAIKEVLE KKIEERK
Length:347
Mass (Da):40,675
Last modified:November 1, 1999 - v1
Checksum:iEF9F024C4DE64FD2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35164.1.
CP004077 Genomic DNA. Translation: AGL48993.1.
PIRiB72423.
RefSeqiNP_227886.1. NC_000853.1.
WP_004082568.1. NZ_CP011107.1.

Genome annotation databases

EnsemblBacteriaiAAD35164; AAD35164; TM_0070.
AGL48993; AGL48993; Tmari_0067.
GeneIDi896895.
KEGGitma:TM0070.
tmi:THEMA_04455.
tmm:Tmari_0067.
tmw:THMA_0066.
PATRICi23934980. VBITheMar51294_0068.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35164.1.
CP004077 Genomic DNA. Translation: AGL48993.1.
PIRiB72423.
RefSeqiNP_227886.1. NC_000853.1.
WP_004082568.1. NZ_CP011107.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VBRX-ray1.80A/B20-347[»]
1VBUX-ray1.80A/B20-347[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0070.

Protein family/group databases

CAZyiGH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35164; AAD35164; TM_0070.
AGL48993; AGL48993; Tmari_0067.
GeneIDi896895.
KEGGitma:TM0070.
tmi:THEMA_04455.
tmm:Tmari_0067.
tmw:THMA_0066.
PATRICi23934980. VBITheMar51294_0068.

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG3693. LUCA.
KOiK01181.
OMAiVKAIQFW.
OrthoDBiEOG6XQ3JG.

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-70-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR001000. GH10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099Imported and MSB8Imported.
  2. "The genome organization of Thermotoga maritima reflects its lifestyle."
    Latif H., Lerman J.A., Portnoy V.A., Tarasova Y., Nagarajan H., Schrimpe-Rutledge A.C., Smith R.D., Adkins J.N., Lee D.H., Qiu Y., Zengler K.
    PLoS Genet. 9:E1003485-E1003485(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099Imported and MSB8Imported.

Entry informationi

Entry nameiQ9WXS5_THEMA
AccessioniPrimary (citable) accession number: Q9WXS5
Secondary accession number(s): G4FGY5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: April 13, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.