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Protein
Submitted name:

Transcriptional regulator, IclR family

Gene

TM_0065

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-65-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, IclR familyImported
Gene namesi
Ordered Locus Names:TM_0065Imported
ORF Names:Tmari_0062Imported
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Imported
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000013901 Componenti: Chromosome
  • UP000008183 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0065.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1MKMX-ray2.20A/B1-246[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6262HTH iclR-type DNA-bindingInterPro annotationAdd
BLAST
Domaini63 – 246184IclR-ED (iclR effector binding)InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH iclR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105J4Q. Bacteria.
COG1414. LUCA.
OMAiWRDREEV.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR029016. GAF_dom-like.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]
SMARTiSM00346. HTH_ICLR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WXS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNTLKKAFEI LDFIVKNPGD VSVSEIAEKF NMSVSNAYKY MVVLEEKGFV
60 70 80 90 100
LRKKDKRYVP GYKLIEYGSF VLRRFNIRDI AHDHLVDIMK RTGETVHLIL
110 120 130 140 150
KDGFEGVYID KVEGEQSIPM VSRLGMKVDL YSTASGKSIL AFVPEKELKE
160 170 180 190 200
YLKIVELKPK TPNTITNPRV LKRELEKIRK RGYAVDNEEN EIGIMCVGVP
210 220 230 240
IFDHNGYPVA GVSISGVARK FTEEKIEEYS DVLKEKAEEI SRKLGY
Length:246
Mass (Da):28,119
Last modified:November 1, 1999 - v1
Checksum:iAD68B31A05A27D91
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35159.1.
CP004077 Genomic DNA. Translation: AGL48988.1.
PIRiE72422.
RefSeqiNP_227881.1. NC_000853.1.
WP_004082558.1. NZ_CP011107.1.

Genome annotation databases

EnsemblBacteriaiAAD35159; AAD35159; TM_0065.
AGL48988; AGL48988; Tmari_0062.
GeneIDi896889.
KEGGitma:TM0065.
tmi:THEMA_04480.
tmm:Tmari_0062.
tmw:THMA_0061.
PATRICi23934970. VBITheMar51294_0063.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35159.1.
CP004077 Genomic DNA. Translation: AGL48988.1.
PIRiE72422.
RefSeqiNP_227881.1. NC_000853.1.
WP_004082558.1. NZ_CP011107.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1MKMX-ray2.20A/B1-246[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0065.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35159; AAD35159; TM_0065.
AGL48988; AGL48988; Tmari_0062.
GeneIDi896889.
KEGGitma:TM0065.
tmi:THEMA_04480.
tmm:Tmari_0062.
tmw:THMA_0061.
PATRICi23934970. VBITheMar51294_0063.

Phylogenomic databases

eggNOGiENOG4105J4Q. Bacteria.
COG1414. LUCA.
OMAiWRDREEV.

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-65-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR029016. GAF_dom-like.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]
SMARTiSM00346. HTH_ICLR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ9WXS0_THEMA
AccessioniPrimary (citable) accession number: Q9WXS0
Secondary accession number(s): G4FGY0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: September 7, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.