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Protein
Submitted name:

Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein

Gene

TM_0031

Organism
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi56 – 561CalciumCombined sources
Metal bindingi60 – 601Calcium; via carbonyl oxygenCombined sources
Metal bindingi165 – 1651CalciumCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-31-MONOMER.

Protein family/group databases

TCDBi3.A.1.5.16. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Submitted name:
Oligopeptide ABC transporter, periplasmic oligopeptide-binding proteinImported
Gene namesi
Ordered Locus Names:TM_0031Imported
OrganismiThermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Imported
Taxonomic identifieri243274 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga
Proteomesi
  • UP000008183 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 606585Sequence analysisPRO_5004335943Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243274.TM0031.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2O7IX-ray1.50A22-606[»]
3I5OX-ray1.50A/B22-606[»]
4JSDX-ray2.05A24-605[»]
4JSOX-ray2.07A24-605[»]
ProteinModelPortaliQ9WXN8.
SMRiQ9WXN8. Positions 24-605.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9WXN8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini73 – 465393SBP_bac_5InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107QMM. Bacteria.
ENOG410XNRA. LUCA.
InParanoidiQ9WXN8.
KOiK02035.
OMAiKNTQLIG.
OrthoDBiEOG6QRW4B.

Family and domain databases

InterProiIPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WXN8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGMRKSLVLL LALLVLSSLM AQVSLPREDT VYIGGALWGP ATTWNLYAPQ
60 70 80 90 100
STWGTDQFMY LPAFQYDLGR DAWIPVIAER YEFVDDKTLR IYIRPEARWS
110 120 130 140 150
DGVPITADDF VYALELTKEL GIGPGGGWDT YIEYVKAVDT KVVEFKAKEE
160 170 180 190 200
NLNYFQFLSY SLGAQPMPKH VYERIRAQMN IKDWINDKPE EQVVSGPYKL
210 220 230 240 250
YYYDPNIVVY QRVDDWWGKD IFGLPRPKYL AHVIYKDNPS ASLAFERGDI
260 270 280 290 300
DWNGLFIPSV WELWEKKGLP VGTWYKKEPY FIPDGVGFVY VNNTKPGLSD
310 320 330 340 350
PAVRKAIAYA IPYNEMLKKA YFGYGSQAHP SMVIDLFEPY KQYIDYELAK
360 370 380 390 400
KTFGTEDGRI PFDLDMANKI LDEAGYKKGP DGVRVGPDGT KLGPYTISVP
410 420 430 440 450
YGWTDWMMMC EMIAKNLRSI GIDVKTEFPD FSVWADRMTK GTFDLIISWS
460 470 480 490 500
VGPSFDHPFN IYRFVLDKRL SKPVGEVTWA GDWERYDNDE VVELLDKAVS
510 520 530 540 550
TLDPEVRKQA YFRIQQIIYR DMPSIPAFYT AHWYEYSTKY WINWPSEDNP
560 570 580 590 600
AWFRPSPWHA DAWPTLFIIS KKSDPQPVPS WLGTVDEGGI EIPTAKIFED

LQKATM
Length:606
Mass (Da):69,942
Last modified:November 1, 1999 - v1
Checksum:iFC7217EC175A6082
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35125.1.
PIRiA72429.
RefSeqiNP_227847.1. NC_000853.1.
WP_010865032.1. NC_000853.1.

Genome annotation databases

EnsemblBacteriaiAAD35125; AAD35125; TM_0031.
GeneIDi896852.
KEGGitma:TM0031.
PATRICi23934902. VBITheMar51294_0029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000512 Genomic DNA. Translation: AAD35125.1.
PIRiA72429.
RefSeqiNP_227847.1. NC_000853.1.
WP_010865032.1. NC_000853.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2O7IX-ray1.50A22-606[»]
3I5OX-ray1.50A/B22-606[»]
4JSDX-ray2.05A24-605[»]
4JSOX-ray2.07A24-605[»]
ProteinModelPortaliQ9WXN8.
SMRiQ9WXN8. Positions 24-605.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243274.TM0031.

Protein family/group databases

TCDBi3.A.1.5.16. the atp-binding cassette (abc) superfamily.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD35125; AAD35125; TM_0031.
GeneIDi896852.
KEGGitma:TM0031.
PATRICi23934902. VBITheMar51294_0029.

Phylogenomic databases

eggNOGiENOG4107QMM. Bacteria.
ENOG410XNRA. LUCA.
InParanoidiQ9WXN8.
KOiK02035.
OMAiKNTQLIG.
OrthoDBiEOG6QRW4B.

Enzyme and pathway databases

BioCyciTMAR243274:GC6P-31-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9WXN8.

Family and domain databases

InterProiIPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099Imported.
  2. "Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold."
    Cuneo M.J., Beese L.S., Hellinga H.W.
    J. Biol. Chem. 284:33217-33223(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 22-606.
  3. "Molecular details of ligand selectivity determinants in a promiscuous beta-glucan periplasmic binding protein."
    Munshi P., Stanley C.B., Ghimire-Rijal S., Lu X., Myles D.A., Cuneo M.J.
    BMC Struct. Biol. 13:18-18(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 24-605 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ9WXN8_THEMA
AccessioniPrimary (citable) accession number: Q9WXN8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: March 16, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.