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Protein

DNA repair protein RecN

Gene

recN

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in recombinational repair of damaged DNA.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi61 – 68ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA repair protein RecN
Alternative name(s):
Recombination protein N
Gene namesi
Name:recN
Ordered Locus Names:DR_1477
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001880161 – 564DNA repair protein RecNAdd BLAST564

Interactioni

Protein-protein interaction databases

DIPiDIP-59988N.
STRINGi243230.DR_1477.

Structurei

Secondary structure

1564
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi36 – 42Combined sources7
Beta strandi45 – 51Combined sources7
Beta strandi54 – 62Combined sources9
Helixi63 – 70Combined sources8
Helixi72 – 77Combined sources6
Helixi84 – 86Combined sources3
Beta strandi92 – 99Combined sources8
Beta strandi110 – 116Combined sources7
Beta strandi121 – 125Combined sources5
Beta strandi128 – 130Combined sources3
Helixi132 – 139Combined sources8
Turni140 – 142Combined sources3
Beta strandi143 – 146Combined sources4
Turni147 – 149Combined sources3
Turni151 – 154Combined sources4
Helixi157 – 165Combined sources9
Helixi169 – 191Combined sources23
Helixi196 – 216Combined sources21
Turni220 – 222Combined sources3
Helixi223 – 250Combined sources28
Beta strandi253 – 255Combined sources3
Helixi257 – 272Combined sources16
Helixi276 – 304Combined sources29
Helixi310 – 330Combined sources21
Helixi334 – 358Combined sources25
Helixi365 – 398Combined sources34
Turni399 – 402Combined sources4
Beta strandi407 – 419Combined sources13
Beta strandi422 – 435Combined sources14
Helixi441 – 443Combined sources3
Helixi447 – 461Combined sources15
Beta strandi464 – 472Combined sources9
Turni473 – 476Combined sources4
Helixi479 – 492Combined sources14
Turni493 – 495Combined sources3
Beta strandi496 – 501Combined sources6
Helixi505 – 508Combined sources4
Beta strandi512 – 522Combined sources11
Beta strandi525 – 532Combined sources8
Helixi536 – 547Combined sources12
Helixi552 – 562Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ABXX-ray2.04A/B/C/D196-364[»]
4ABYX-ray3.00A/B/C/D1-195[»]
A/B/C/D365-564[»]
4AD8X-ray4.00A1-237[»]
A305-564[»]
ProteinModelPortaliQ9WXF2.
SMRiQ9WXF2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RecN family.Curated

Phylogenomic databases

eggNOGiENOG4105C4F. Bacteria.
COG0497. LUCA.
HOGENOMiHOG000009326.
InParanoidiQ9WXF2.
KOiK03631.
OMAiQVICVTH.
OrthoDBiPOG091H029Z.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR004604. DNA_recomb/repair_RecN.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PANTHERiPTHR11059. PTHR11059. 1 hit.
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
PIRSFiPIRSF003128. RecN. 1 hit.
SUPFAMiSSF52540. SSF52540. 3 hits.
TIGRFAMsiTIGR00634. recN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9WXF2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRKARTPKA APVPEAVAVV EPPPPDAAPT GPRLSRLEIR NLATITQLEL
60 70 80 90 100
ELGGGFCAFT GETGAGKSII VDALGLLLGG RANHDLIRSG EKELLVTGFW
110 120 130 140 150
GDGDESEADS ASRRLSSAGR GAARLSGEVV SVRELQEWAQ GRLTIHWQHS
160 170 180 190 200
AVSLLSPANQ RGLLDRRVTK EAQAYAAAHA AWREAVSRLE RLQASQRERA
210 220 230 240 250
RQIDLLAFQV QEISEVSPDP GEEEGLNTEL SRLSNLHTIA QAAAGGVELL
260 270 280 290 300
SDGDLNAAGL IGEAVRALNA GAKYDETVMQ LQNELRAALE SVQAIAGELR
310 320 330 340 350
DVAEGSAADP EALDRVEARL SALSKLKNKY GPTLEDVVEF GAQAAEELAG
360 370 380 390 400
LEEDERDAGS LQADVDALHA ELLKVGQALD AAREREAEPL VDSLLAVIRE
410 420 430 440 450
LGMPHARMEF ALSALAEPAA YGLSDVLLRF SANPGEELGP LSDVASGGEL
460 470 480 490 500
SRVMLAVSTV LGADTPSVVF DEVDAGIGGA AAIAVAEQLS RLADTRQVLV
510 520 530 540 550
VTHLAQIAAR AHHHYKVEKQ VEDGRTVSHV RLLTGDERLE EIARMLSGNT
560
SEAALEHARE LLAG
Length:564
Mass (Da):59,799
Last modified:May 30, 2000 - v2
Checksum:iAA620A2C2F0F615F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB023411 Genomic DNA. Translation: BAA76704.1.
AE000513 Genomic DNA. Translation: AAF11043.1.
PIRiA75391.
RefSeqiNP_295200.1. NC_001263.1.
WP_010888116.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11043; AAF11043; DR_1477.
GeneIDi1797679.
KEGGidra:DR_1477.
PATRICi21630561. VBIDeiRad64572_1677.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB023411 Genomic DNA. Translation: BAA76704.1.
AE000513 Genomic DNA. Translation: AAF11043.1.
PIRiA75391.
RefSeqiNP_295200.1. NC_001263.1.
WP_010888116.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ABXX-ray2.04A/B/C/D196-364[»]
4ABYX-ray3.00A/B/C/D1-195[»]
A/B/C/D365-564[»]
4AD8X-ray4.00A1-237[»]
A305-564[»]
ProteinModelPortaliQ9WXF2.
SMRiQ9WXF2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59988N.
STRINGi243230.DR_1477.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11043; AAF11043; DR_1477.
GeneIDi1797679.
KEGGidra:DR_1477.
PATRICi21630561. VBIDeiRad64572_1677.

Phylogenomic databases

eggNOGiENOG4105C4F. Bacteria.
COG0497. LUCA.
HOGENOMiHOG000009326.
InParanoidiQ9WXF2.
KOiK03631.
OMAiQVICVTH.
OrthoDBiPOG091H029Z.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR004604. DNA_recomb/repair_RecN.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PANTHERiPTHR11059. PTHR11059. 1 hit.
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
PIRSFiPIRSF003128. RecN. 1 hit.
SUPFAMiSSF52540. SSF52540. 3 hits.
TIGRFAMsiTIGR00634. recN. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRECN_DEIRA
AccessioniPrimary (citable) accession number: Q9WXF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: November 2, 2016
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.