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Q9WVK7

- HCDH_RAT

UniProt

Q9WVK7 - HCDH_RAT

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Protein

Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

Gene
Hadh, Had, Hadhsc, Schad
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Catalytic activityi

(S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei57 – 571NAD By similarity
Binding sitei73 – 731Coenzyme A By similarity
Binding sitei80 – 801Coenzyme A By similarity
Binding sitei122 – 1221NAD By similarity
Binding sitei127 – 1271NAD By similarity
Binding sitei149 – 1491Coenzyme A By similarity
Binding sitei149 – 1491NAD By similarity
Sitei170 – 1701Important for catalytic activity By similarity
Binding sitei173 – 1731NAD By similarity
Binding sitei305 – 3051NAD By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi34 – 396NAD By similarity

GO - Molecular functioni

  1. 3-hydroxyacyl-CoA dehydrogenase activity Source: RGD
  2. NAD+ binding Source: InterPro

GO - Biological processi

  1. fatty acid beta-oxidation Source: RGD
  2. negative regulation of insulin secretion Source: RGD
  3. response to activity Source: RGD
  4. response to drug Source: RGD
  5. response to hormone Source: RGD
  6. response to insulin Source: RGD
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Fatty acid metabolism, Lipid metabolism

Keywords - Ligandi

NAD

Enzyme and pathway databases

SABIO-RKQ9WVK7.
UniPathwayiUPA00659.

Names & Taxonomyi

Protein namesi
Recommended name:
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial (EC:1.1.1.35)
Short name:
HCDH
Alternative name(s):
Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase
Short-chain 3-hydroxyacyl-CoA dehydrogenase
Gene namesi
Name:Hadh
Synonyms:Had, Hadhsc, Schad
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 2

Organism-specific databases

RGDi69321. Hadh.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial inner membrane Source: Ensembl
  2. mitochondrial matrix Source: UniProtKB-SubCell
  3. nucleus Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 1212Mitochondrion By similarityAdd
BLAST
Chaini13 – 314302Hydroxyacyl-coenzyme A dehydrogenase, mitochondrialPRO_0000007409Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei75 – 751N6-acetyllysine By similarity
Modified residuei80 – 801N6-succinyllysine By similarity
Modified residuei81 – 811N6-acetyllysine; alternate By similarity
Modified residuei81 – 811N6-succinyllysine; alternate By similarity
Modified residuei87 – 871N6-acetyllysine; alternate By similarity
Modified residuei87 – 871N6-succinyllysine; alternate By similarity
Modified residuei125 – 1251N6-acetyllysine By similarity
Modified residuei136 – 1361N6-acetyllysine; alternate By similarity
Modified residuei136 – 1361N6-succinyllysine; alternate By similarity
Modified residuei179 – 1791N6-acetyllysine By similarity
Modified residuei185 – 1851N6-acetyllysine; alternate By similarity
Modified residuei185 – 1851N6-succinyllysine; alternate By similarity
Modified residuei192 – 1921N6-acetyllysine; alternate By similarity
Modified residuei192 – 1921N6-succinyllysine; alternate By similarity
Modified residuei202 – 2021N6-acetyllysine; alternate By similarity
Modified residuei202 – 2021N6-succinyllysine; alternate By similarity
Modified residuei206 – 2061N6-succinyllysine By similarity
Modified residuei212 – 2121N6-acetyllysine; alternate By similarity
Modified residuei212 – 2121N6-succinyllysine; alternate By similarity
Modified residuei241 – 2411N6-acetyllysine; alternate By similarity
Modified residuei241 – 2411N6-succinyllysine; alternate By similarity
Modified residuei312 – 3121N6-acetyllysine; alternate By similarity
Modified residuei312 – 3121N6-succinyllysine; alternate By similarity

Post-translational modificationi

Succinylation at Lys-81, adjacent to a coenzyme A binding site. Desuccinylated by SIRT5 By similarity.

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ9WVK7.
PRIDEiQ9WVK7.

PTM databases

PhosphoSiteiQ9WVK7.

Expressioni

Gene expression databases

GenevestigatoriQ9WVK7.

Interactioni

Subunit structurei

Homodimer By similarity.

Protein-protein interaction databases

IntActiQ9WVK7. 1 interaction.
STRINGi10116.ENSRNOP00000014658.

Structurei

3D structure databases

ProteinModelPortaliQ9WVK7.
SMRiQ9WVK7. Positions 24-314.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG1250.
GeneTreeiENSGT00720000108673.
HOGENOMiHOG000141498.
HOVERGENiHBG000832.
InParanoidiQ9WVK7.
KOiK00022.
OMAiVARKKFA.
OrthoDBiEOG7K3TMS.
PhylomeDBiQ9WVK7.
TreeFamiTF300886.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR022694. 3-OHacyl-CoA_DH.
IPR006180. 3-OHacyl-CoA_DH_CS.
IPR006176. 3-OHacyl-CoA_DH_NAD-bd.
IPR006108. 3HC_DH_C.
IPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00725. 3HCDH. 1 hit.
PF02737. 3HCDH_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000105. HCDH. 1 hit.
SUPFAMiSSF48179. SSF48179. 1 hit.
PROSITEiPS00067. 3HCDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9WVK7-1 [UniParc]FASTAAdd to Basket

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MAFVTRQFVR SMSSSSSASA AAKKILIKHV TVIGGGLMGA GIAQVAAATG    50
HTVVLVDQTE DILAKSKKGI EESLKRMAKK KFTENPKAAD EFVEKTLSSL 100
STSTDAASVV HSTDLVVEAI VENLKLKNEL FQRLDKFAAE HTIFASNTSS 150
LQITNIANAT TRQDRFAGLH FFNPVPMMKL VEVIKTPMTS QKTFESLVDF 200
CKTLGKHPVS CKDTPGFIVN RLLVPYLIEA IRLHERGDAS KEDIDTAMKL 250
GAGYPMGPFE LLDYVGLDTT KFILDGWHEM DPENPLFQPS PSMNNLVAQK 300
KLGKKTGEGF YKYK 314
Length:314
Mass (Da):34,448
Last modified:November 1, 1999 - v1
Checksum:iB36518766D6C3828
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF095449 mRNA. Translation: AAD42162.1.
PIRiS74114.
RefSeqiNP_476534.1. NM_057186.2.
UniGeneiRn.92789.

Genome annotation databases

EnsembliENSRNOT00000014658; ENSRNOP00000014658; ENSRNOG00000010697.
GeneIDi113965.
KEGGirno:113965.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF095449 mRNA. Translation: AAD42162.1 .
PIRi S74114.
RefSeqi NP_476534.1. NM_057186.2.
UniGenei Rn.92789.

3D structure databases

ProteinModelPortali Q9WVK7.
SMRi Q9WVK7. Positions 24-314.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q9WVK7. 1 interaction.
STRINGi 10116.ENSRNOP00000014658.

Chemistry

ChEMBLi CHEMBL2176821.

PTM databases

PhosphoSitei Q9WVK7.

Proteomic databases

PaxDbi Q9WVK7.
PRIDEi Q9WVK7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000014658 ; ENSRNOP00000014658 ; ENSRNOG00000010697 .
GeneIDi 113965.
KEGGi rno:113965.

Organism-specific databases

CTDi 3033.
RGDi 69321. Hadh.

Phylogenomic databases

eggNOGi COG1250.
GeneTreei ENSGT00720000108673.
HOGENOMi HOG000141498.
HOVERGENi HBG000832.
InParanoidi Q9WVK7.
KOi K00022.
OMAi VARKKFA.
OrthoDBi EOG7K3TMS.
PhylomeDBi Q9WVK7.
TreeFami TF300886.

Enzyme and pathway databases

UniPathwayi UPA00659 .
SABIO-RK Q9WVK7.

Miscellaneous databases

NextBioi 618105.
PROi Q9WVK7.

Gene expression databases

Genevestigatori Q9WVK7.

Family and domain databases

Gene3Di 1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProi IPR022694. 3-OHacyl-CoA_DH.
IPR006180. 3-OHacyl-CoA_DH_CS.
IPR006176. 3-OHacyl-CoA_DH_NAD-bd.
IPR006108. 3HC_DH_C.
IPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR016040. NAD(P)-bd_dom.
[Graphical view ]
Pfami PF00725. 3HCDH. 1 hit.
PF02737. 3HCDH_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000105. HCDH. 1 hit.
SUPFAMi SSF48179. SSF48179. 1 hit.
PROSITEi PS00067. 3HCDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Identity of heart and liver L-3-hydroxyacyl coenzyme A dehydrogenase."
    He X.-Y., Zhang G., Blecha F., Yang S.-Y.
    Biochim. Biophys. Acta 1437:119-123(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Sprague-Dawley.
    Tissue: Heart muscle and Liver.

Entry informationi

Entry nameiHCDH_RAT
AccessioniPrimary (citable) accession number: Q9WVK7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1999
Last modified: May 14, 2014
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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